Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS14635 and HSERO_RS14640 are separated by 229 nucleotidesHSERO_RS14640 and HSERO_RS14645 are separated by 427 nucleotidesHSERO_RS14645 and HSERO_RS14650 are separated by 239 nucleotidesHSERO_RS14650 and HSERO_RS14655 are separated by 20 nucleotides HSERO_RS14635: HSERO_RS14635 - hypothetical protein, at 3,313,582 to 3,315,117 _RS14635 HSERO_RS14640: HSERO_RS14640 - peptide chain release factor 3, at 3,315,347 to 3,317,035 _RS14640 HSERO_RS14645: HSERO_RS14645 - inorganic pyrophosphatase, at 3,317,463 to 3,317,996 _RS14645 HSERO_RS14650: HSERO_RS14650 - porphyrin biosynthesis protein, at 3,318,236 to 3,319,435 _RS14650 HSERO_RS14655: HSERO_RS14655 - uroporphyrin-III C-methyltransferase, at 3,319,456 to 3,320,661 _RS14655
Group Condition HSERO_RS14635 HSERO_RS14640 HSERO_RS14645 HSERO_RS14650 HSERO_RS14655
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 -2.8 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.0 -2.3 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 -2.0 N.D. N.D. N.D.
carbon source D-Sorbitol (C) -0.3 -1.9 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -2.1 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 -2.2 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 -1.6 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -1.7 N.D. N.D. N.D.
carbon source Xylitol (C) -0.1 -1.6 N.D. N.D. N.D.
stress Dimethyl Sulfoxide 5 vol% -0.0 -1.7 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 -1.5 N.D. N.D. N.D.
carbon source Xylitol (C) +0.0 -1.5 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 -1.6 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 -1.9 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.0 -1.3 N.D. N.D. N.D.
carbon source L-Malic (C) -0.3 -1.0 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.2 -1.0 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.1 -1.1 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 -1.5 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.1 -1.1 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.1 -1.1 N.D. N.D. N.D.
stress Cisplatin 0.003 mg/ml -0.3 -0.7 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3 -0.8 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.1 -1.0 N.D. N.D. N.D.
stress sodium fluoride 100 mM +0.1 -1.0 N.D. N.D. N.D.
carbon source m-Inositol (C) +0.1 -0.9 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 -0.9 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 -0.7 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 -0.6 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.7 -0.7 N.D. N.D. N.D.
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