Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS14620	HSERO_RS14625	HSERO_RS14630	HSERO_RS14635	HSERO_RS14640
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	-0.1	-0.1	+0.1	-2.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-0.4	-0.1	-0.3	-2.0
carbon source	Xylitol (C)	-0.5	-0.3	-0.5	+0.0	-1.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.6	-0.2	+0.0	-0.1	-1.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	-0.4	+0.0	-0.0	-2.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	-0.3	+0.3	-0.1	-2.1
carbon source	L-Arabinose (C)	-0.8	-0.3	-0.6	-0.2	-0.6
carbon source	D-Sorbitol (C)	+0.0	-0.1	-0.2	-0.3	-1.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.7	-0.2	-0.1	-0.2	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.9	-0.7	+0.2	+0.1	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-1.0	-0.3	+0.2	-0.1	-1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-0.2	-0.2	-0.3	-1.6
carbon source	D-Gluconic Acid (C)	-0.4	+0.1	-1.0	-0.6	-0.3
carbon source	Xylitol (C)	+0.3	+0.0	-0.4	-0.1	-1.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	-0.0	+0.5	+0.3	-2.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.0	-0.4	+0.3	+0.2	-1.6
stress	Dimethyl Sulfoxide 5 vol%	+0.4	-0.1	-0.1	-0.0	-1.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	+0.0	+0.3	-1.5	+0.1	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.4	-0.2	+0.5	-0.1	-1.1
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 8 days	+0.0	+0.2	-1.7	+0.0	+0.2
carbon source	m-Inositol (C)	+0.6	+0.1	-1.0	+0.1	-0.9
carbon source	L-Fucose (C)	-0.1	+0.6	-1.1	-0.3	-0.1
stress	sodium fluoride 100 mM	+0.5	-0.3	-0.1	+0.1	-1.0
carbon source	L-Malic (C)	+0.7	-0.4	-0.3	+0.1	-0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+0.1	+0.6	+0.5	-1.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.8	-0.1	+0.4	+0.3	-1.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	-0.2	+0.5	+0.5	-0.6
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 3 days	+0.4	+0.5	-1.4	+0.3	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.1	-0.1	+1.0	+0.3	-0.9
control	NoPredeControl	-0.2	+1.1	+0.3	-0.0	+0.5