Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS14560	HSERO_RS14565	HSERO_RS14570	HSERO_RS14575	HSERO_RS14580
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.1	-0.6	-0.6	-0.5
carbon source	L-Lactate (C)	N.D.	-0.1	+0.1	-0.6	-1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	N.D.	-0.1	-0.2	-0.2	-1.0
stress	Cisplatin 0.003 mg/ml	N.D.	+0.1	-1.2	-0.4	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	-0.0	-0.4	-0.5	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	N.D.	-0.1	-0.3	-0.1	-0.7
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.2	-0.8	-0.6	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.1	-0.2	-0.4	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.2	-0.6	-0.4	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	-0.2	-0.4	+0.0	-0.7
control	NoPredeControl	N.D.	-0.1	-0.1	-1.1	+0.2
carbon source	L-Rhamnose (C)	N.D.	-0.2	+0.1	-1.0	+0.1
stress	sodium fluoride 100 mM	N.D.	+0.1	-1.1	-0.3	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X	N.D.	-0.2	-0.3	+0.2	-0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.3	-0.3	-0.4	-0.2
stress	Sisomicin 0.125 mg/ml	N.D.	+0.4	-1.5	+0.5	-0.1
carbon source	Carbon source 2-Deoxy-D-Ribose 5 mM	N.D.	-0.1	-0.3	+0.5	-0.4
carbon source	L-Malic (C)	N.D.	+0.2	-0.2	+0.4	-0.6
stress	Lomefloxacin 0.012 mM	N.D.	-0.0	-0.3	+0.7	-0.5
stress	Cobalt chloride 0.2 mM	N.D.	+0.2	-1.0	+0.5	+0.3
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.2	-0.5	-0.0	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	+0.4	+0.3	-0.3	-0.3
carbon source	L-Fucose (C)	N.D.	-0.0	+0.5	-0.8	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.2	-0.4	+0.2	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	N.D.	+0.3	-0.3	+1.1	-0.7
supernatant control	Vogels_fungal_media; pH 5.5	N.D.	+0.3	-0.3	+0.5	+0.2
micoeukaryotes	C.elegans, mixed culture-1	N.D.	-0.0	+0.0	-0.5	+1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.1	-0.4	+0.6	+0.8
carbon source	L-Rhamnose (C)	N.D.	-0.0	+0.3	+0.5	+0.4
stress	nitrate 200 mM	N.D.	+0.1	-0.2	+0.8	+0.5