Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

Or view all 244 experiments or choose conditions or try the comparative fitness browser

Group	Condition	HSERO_RS14455	HSERO_RS14460	HSERO_RS14465	HSERO_RS14470	HSERO_RS14475
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-0.2	-0.0	-0.8	-1.2
agar plate interaction control	Taped volatile agar plate with no fungus	-0.5	+0.1	-0.4	-0.4	-0.2
carbon source	D-Glucose (C)	+0.1	-0.1	+0.0	-0.5	-0.8
stress	Fusidic 0.025 mg/ml	-0.1	-0.2	+0.4	-0.3	-0.9
vitamin	With vitamins t1	-0.2	+0.1	+0.0	+0.1	-1.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	+0.2	+0.0	-0.1	-0.7
carbon source	L-Asparagine (C)	+0.2	+0.2	-0.1	-0.5	-0.4
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.1	-0.2	-0.2	-0.6	+0.5
carbon source	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL	-0.1	+0.1	-0.1	+0.5	-0.8
agar plate interaction control	Taped volatile agar plate with no fungus	-0.5	+0.1	-0.0	-0.4	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	-0.0	-0.1	-0.3	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-0.0	+0.2	+0.4	-0.7
stress	Lomefloxacin 0.012 mM	+0.2	-0.3	+0.2	-0.3	+0.2
stress	nitrate 200 mM	-0.2	-0.2	+0.0	-0.2	+0.7
plant	Control soil assay; outgrowth in LB	+0.4	-0.0	-0.2	+0.3	-0.4
stress	Cobalt chloride 0.2 mM	-0.3	-0.0	+0.2	-0.2	+0.5
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+0.1	-0.0	-0.1	-0.5	+0.7
carbon source	L-Lactate (C)	-0.1	+0.5	+0.0	-0.4	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.3	+0.2	-0.1	-0.4	+1.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.1	-0.2	+0.7	-0.3	+0.2
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.3	-0.2	+0.0	-0.1	+1.0
carbon source	Glycerol (C)	+0.0	-0.0	+0.4	-0.4	+0.4
carbon source	Xylitol (C)	+0.2	+0.1	-0.3	-0.3	+0.7
carbon source	a-Ketoglutaric (C)	-0.0	+0.3	-0.3	+0.3	+0.3
carbon source	L-Malic (C)	+0.2	-0.1	-0.1	-0.3	+0.9
stress	Sisomicin 0.125 mg/ml	+0.4	-0.2	+0.2	-0.4	+0.7
stress	Thallium(I) acetate 0.001 mg/ml	-0.2	-0.2	+0.5	-0.1	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.2	+0.2	+0.5	+0.5	-0.0
carbon source	succinate (C)	-0.1	+0.1	-0.2	+0.4	+0.8
carbon source	D-Galactose (C)	+0.1	+0.2	+0.3	-0.3	+0.8