Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS14395 and HSERO_RS14400 are separated by 88 nucleotidesHSERO_RS14400 and HSERO_RS14405 overlap by 4 nucleotidesHSERO_RS14405 and HSERO_RS14410 are separated by 284 nucleotidesHSERO_RS14410 and HSERO_RS14415 are separated by 360 nucleotides HSERO_RS14395: HSERO_RS14395 - oxygen-binding protein, at 3,260,253 to 3,260,699 _RS14395 HSERO_RS14400: HSERO_RS14400 - luciferase, at 3,260,788 to 3,261,789 _RS14400 HSERO_RS14405: HSERO_RS14405 - molybdenum transport protein ModE, at 3,261,786 to 3,262,595 _RS14405 HSERO_RS14410: HSERO_RS14410 - lactoylglutathione lyase, at 3,262,880 to 3,263,266 _RS14410 HSERO_RS14415: HSERO_RS14415 - Ler DNA-binding protein H-NS, at 3,263,627 to 3,263,971 _RS14415
Group Condition HSERO_RS14395 HSERO_RS14400 HSERO_RS14405 HSERO_RS14410 HSERO_RS14415
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.0 -0.2 -0.4 -0.4 +0.0
stress Lomefloxacin 0.012 mM -1.1 -0.4 -0.1 +0.1 -0.3
carbon source L-Rhamnose (C) -1.4 +0.1 -0.3 +0.1 -0.2
carbon source L-Malic (C) -1.2 -0.1 -0.3 +0.1 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.2 -0.3 -0.1 -0.1 +0.1
carbon source D-Glucose (C) -1.5 +0.6 -0.2 -0.3 -0.1
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.7 -0.3 +0.1 -0.5 +0.0
carbon source L-Lactate (C) -1.5 -0.1 +0.1 +0.3 -0.2
stress Dimethyl Sulfoxide 5 vol% -1.0 -0.2 -0.1 +0.1 -0.1
carbon source D-Gluconic Acid (C) -0.8 +0.2 -0.4 +0.1 -0.3
carbon source D,L-Lactate (C) -1.4 +0.3 -0.2 +0.1 -0.1
control NoPredeControl -1.1 -0.2 +0.4 -0.1 +0.0
stress nitrate 200 mM -0.8 -0.3 -0.0 +0.3 -0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.9 -0.2 +0.3 +0.0 -0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB -1.1 +0.1 +0.4 -0.0 -0.1
agar plate interaction control Taped volatile agar plate with no fungus -0.6 +0.3 -0.3 -0.2 +0.2
carbon source D-Ribose (C) -1.0 +0.4 -0.1 +0.2 -0.2
carbon source D-Mannose (C) -0.8 +0.5 +0.1 +0.1 -0.2
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days +1.0 -0.4 -1.0 +0.0 +0.3
carbon source L-Fucose (C) -0.7 +0.1 +0.1 +0.5 -0.2
carbon source D-Gluconic Acid (C) -0.5 +0.6 +0.1 +0.1 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.9 -0.1 -0.4 -0.1 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 +0.2 +0.4 +0.2 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.8 +0.7 -0.4 -0.1 +0.1
carbon source L-Arabinose (C) +0.4 +0.7 +0.3 -0.1 -0.2
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +1.2 -0.1 +0.1 +0.3 -0.1
carbon source L-Fucose (C) +0.6 +0.3 +0.2 +0.5 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.8 +0.3 +0.1 +0.2 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +3.5 +0.2 -0.0 +0.0 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +3.0 +1.0 +0.2 +0.3 +0.1
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