Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS13815 and HSERO_RS13820 overlap by 4 nucleotidesHSERO_RS13820 and HSERO_RS13825 are separated by 133 nucleotidesHSERO_RS13825 and HSERO_RS13830 are separated by 8 nucleotidesHSERO_RS13830 and HSERO_RS13835 are separated by 32 nucleotides HSERO_RS13815: HSERO_RS13815 - glycosyltransferase, at 3,141,372 to 3,142,604 _RS13815 HSERO_RS13820: HSERO_RS13820 - hypothetical protein, at 3,142,601 to 3,144,115 _RS13820 HSERO_RS13825: HSERO_RS13825 - hypothetical protein, at 3,144,249 to 3,147,023 _RS13825 HSERO_RS13830: HSERO_RS13830 - hypothetical protein, at 3,147,032 to 3,147,283 _RS13830 HSERO_RS13835: HSERO_RS13835 - hypothetical protein, at 3,147,316 to 3,148,074 _RS13835
Group Condition HSERO_RS13815 HSERO_RS13820 HSERO_RS13825 HSERO_RS13830 HSERO_RS13835
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.4 -0.5 -0.1 -0.7 -0.2
carbon source m-Inositol (C) -0.0 -0.5 -0.3 -0.7 -0.2
carbon source L-Fucose (C) +0.0 -0.3 -0.2 -0.5 -0.5
stress Sisomicin 0.125 mg/ml +0.1 -0.6 -0.1 -0.8 +0.1
plant Control soil assay; outgrowth in LB -0.3 -0.5 -0.4 +0.3 -0.2
stress nitrate 200 mM -0.4 +0.3 +0.1 -0.4 -0.5
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.0 -0.4 -0.4 +0.2 -0.3
carbon source Carbon source Deoxyribonucleic from herring sperm 5 mg/mL +0.3 -0.4 -0.2 -0.5 -0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 +0.3 +0.0 +0.5 -0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 +0.5 +0.3 -0.6 -0.1
agar plate interaction control Taped volatile agar plate with no fungus -0.3 +0.7 +0.3 -0.3 +0.2
stress Cisplatin 0.003 mg/ml -0.2 +0.3 +0.1 +0.6 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.0 +0.2 -0.1 +0.9 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 +0.1 +0.2 -0.3 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.0 -0.2 +0.4 +0.5 +0.4
agar plate interaction control Taped volatile agar plate with no fungus -0.0 +0.6 +0.2 -0.1 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.2 +0.1 +0.0 +0.1 +1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.5 +0.5 +0.6 -0.4 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.3 +0.4 +0.2 +0.1 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 -0.1 +0.5 +0.4 +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4 +0.2 +0.1 -0.1 +0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +0.3 +0.2 +0.5 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.5 +0.4 +0.2 +0.2 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.2 +0.2 +0.1 +0.7 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.7 +0.2 +0.4 +0.4 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +0.4 -0.0 +0.4 +0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 +0.1 +0.5 +0.4 +0.8
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.1 +0.7 +0.5 +0.7 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.2 +0.4 +0.3 +0.9 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.1 +0.1 +0.1 +1.5 +0.6
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