Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS13620 and HSERO_RS13625 are separated by 42 nucleotidesHSERO_RS13625 and HSERO_RS13630 are separated by 196 nucleotidesHSERO_RS13630 and HSERO_RS13635 are separated by 107 nucleotidesHSERO_RS13635 and HSERO_RS13640 are separated by 114 nucleotides HSERO_RS13620: HSERO_RS13620 - diguanylate cyclase, at 3,090,893 to 3,094,075 _RS13620 HSERO_RS13625: HSERO_RS13625 - MFS transporter, at 3,094,118 to 3,095,389 _RS13625 HSERO_RS13630: HSERO_RS13630 - aldo-keto reductase, at 3,095,586 to 3,096,635 _RS13630 HSERO_RS13635: HSERO_RS13635 - membrane protein, at 3,096,743 to 3,097,750 _RS13635 HSERO_RS13640: HSERO_RS13640 - hypothetical protein, at 3,097,865 to 3,098,203 _RS13640
Group Condition HSERO_RS13620 HSERO_RS13625 HSERO_RS13630 HSERO_RS13635 HSERO_RS13640
stress Sisomicin 0.125 mg/ml +0.2 -0.6 -0.5 -0.2 -0.9
stress Thallium(I) acetate 0.001 mg/ml -0.2 -0.1 -0.4 -0.5 -0.6
stress Lomefloxacin 0.012 mM -0.5 -0.9 +0.1 -0.4 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 -0.1 +0.0 -0.3 -1.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3 +0.3 -0.2 +0.1 -0.8
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB -0.1 +0.4 +0.3 -0.4 -0.4
carbon source D-Glucose-6-Phosphate (C) -0.0 -0.1 +0.4 +0.4 -0.7
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.6 -0.5 -0.1 -0.4 +0.3
carbon source D-Glucose-6-Phosphate (C) +0.1 -0.1 +0.4 +0.4 -0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 -0.3 +0.2 -0.4 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 +0.4 +0.5 -0.2 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 +0.3 +0.7 -0.0 -0.1
carbon source a-Ketoglutaric (C) +0.2 +0.2 +0.4 +0.3 -0.6
carbon source D,L-Lactate (C) -0.1 +0.5 +0.7 +0.7 -1.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 +0.7 +0.5 -0.1 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.1 +0.3 -0.7 +0.7 +0.4
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.7 +0.3 +0.3 -0.2 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.2 +0.4 -0.0 +0.9 -0.2
carbon source pyruvate (C) +0.1 +0.5 +0.4 +0.3 -0.4
carbon source D-Galactose (C) -0.2 +0.3 +0.8 -0.1 +0.3
carbon source D-Galactose (C) +0.2 +0.6 +0.6 +0.3 -0.5
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.3 +0.9 +0.5 -0.0 +0.2
agar plate interaction control Taped volatile agar plate with no fungus +0.0 +0.3 +0.7 -0.1 +0.5
carbon source Xylitol (C) +0.2 +0.1 +0.4 +0.3 +0.5
carbon source Carbon source D-Glucose 20 mM +0.1 +0.2 +0.2 +0.3 +0.8
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.0 +0.4 +1.5 -0.1 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 +0.1 +0.5 +0.1 +1.6
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.7 -0.0 +0.1 +0.3 +1.2
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days +2.3 +0.2 -0.1 +0.0 +0.3
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days +2.6 +0.2 +0.0 -0.2 +0.4
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