Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS13165	HSERO_RS13170	HSERO_RS13175	HSERO_RS13180	HSERO_RS13185
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.6	-0.8	-0.4	-0.5	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.3	-0.4	-0.6	-0.4	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.3	-0.8	+0.1	-0.1	-0.2
carbon source	Xylitol (C)	+0.1	-0.4	-0.4	-0.1	-0.4
carbon source	D-Xylose (C)	-0.4	+0.2	-0.5	-0.1	-0.1
stress	Cobalt chloride 0.2 mM	+0.5	-0.6	-0.6	+0.0	+0.2
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.3	+0.4	-0.3	+0.1	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.1	-0.4	+0.2	+0.4	-0.5
carbon source	L-Arabinose (C)	+0.5	-0.3	-0.6	+0.0	+0.0
carbon source	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL	-0.2	-0.4	-0.2	+0.2	+0.5
carbon source	L-Proline (C)	+0.5	-0.5	-0.2	+0.1	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.6	+0.7	+0.1	+0.3	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	-0.6	+0.6	-0.1	+0.2	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.7	+0.2	+0.6	-0.2	+0.3
carbon source	Xylitol (C)	+0.3	+0.1	-0.4	+0.3	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.4	+0.4	+0.3	+0.0	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.2	-0.2	-0.1	+0.0	+0.1
carbon source	a-Ketoglutaric (C)	+0.3	+0.4	+0.2	+0.3	-0.2
stress	Sisomicin 0.125 mg/ml	+0.6	-0.2	+0.5	+0.2	-0.1
stress	nitrite 20 mM	+0.6	+0.6	+0.0	-0.5	+0.3
stress	Lomefloxacin 0.012 mM	+0.7	-0.0	+0.4	-0.3	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	-0.0	-0.0	+0.6	+0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	+0.9	+0.3	+0.1	-0.1
control	NoPredeControl	+0.1	+1.0	-0.2	+0.3	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.1	+0.1	+0.2	-0.1	+1.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	-0.3	+1.0	+0.3	+0.1
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.1	+1.0	+0.1	-0.4	+0.6
carbon source	D-Galactose (C)	+0.2	+0.6	-0.1	+0.2	+0.4
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	-0.0	+0.4	+0.4	+0.3	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	+2.1	+0.3	-0.3	-0.0