Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS13105 and HSERO_RS13110 are separated by 330 nucleotidesHSERO_RS13110 and HSERO_RS13115 are separated by 41 nucleotidesHSERO_RS13115 and HSERO_RS13120 are separated by 78 nucleotidesHSERO_RS13120 and HSERO_RS13125 are separated by 10 nucleotides HSERO_RS13105: HSERO_RS13105 - C4-dicarboxylate ABC transporter, at 2,987,629 to 2,988,954 _RS13105 HSERO_RS13110: HSERO_RS13110 - chemotaxis protein, at 2,989,285 to 2,990,775 _RS13110 HSERO_RS13115: HSERO_RS13115 - GCN5 family acetyltransferase, at 2,990,817 to 2,991,242 _RS13115 HSERO_RS13120: HSERO_RS13120 - aromatic compound catabolic protein, at 2,991,321 to 2,991,755 _RS13120 HSERO_RS13125: HSERO_RS13125 - stress responsive protein, at 2,991,766 to 2,992,068 _RS13125
Group Condition HSERO_RS13105 HSERO_RS13110 HSERO_RS13115 HSERO_RS13120 HSERO_RS13125
stress Chloride stress -2.9 -0.1 N.D. N.D. -0.4
carbon source succinate (C) -2.8 -0.0 N.D. N.D. -0.5
stress Chloride stress -3.0 +0.1 N.D. N.D. +0.2
carbon source L-Malic (C) -2.5 -0.0 N.D. N.D. +0.1
carbon source succinate (C) -2.4 -0.1 N.D. N.D. +0.1
stress Sisomicin 0.125 mg/ml -0.6 -0.3 N.D. N.D. -1.3
stress Cisplatin 0.003 mg/ml -0.7 -0.2 N.D. N.D. -1.2
carbon source L-Malic (C) -2.2 +0.2 N.D. N.D. +0.0
stress Lomefloxacin 0.012 mM -0.3 -0.6 N.D. N.D. -1.0
stress nitrate 200 mM -1.2 -0.0 N.D. N.D. -0.5
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days -1.7 +0.3 N.D. N.D. -0.1
carbon source D-Ribose (C) -0.3 -0.1 N.D. N.D. -1.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB +0.1 +0.3 N.D. N.D. -1.8
stress Thallium(I) acetate 0.001 mg/ml -0.2 +0.0 N.D. N.D. -1.2
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 3 days -1.3 +0.1 N.D. N.D. -0.1
stress Fusidic 0.025 mg/ml +0.1 +0.2 N.D. N.D. -1.3
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.6 +0.4 N.D. N.D. -0.7
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days -1.1 +0.1 N.D. N.D. +0.1
nitrogen source nitrate (N); low aeration -1.0 +0.0 N.D. N.D. +0.2
carbon source L-Arabinose (C) -1.3 +0.0 N.D. N.D. +0.8
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.5 -0.0 N.D. N.D. -0.8
carbon source Glycerol (C) -0.7 -0.2 N.D. N.D. +0.6
micoeukaryotes C.elegans, mixed culture-2 +0.4 +0.4 N.D. N.D. -0.5
stress Cobalt chloride 0.2 mM +1.0 -0.2 N.D. N.D. +0.1
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.2 +0.1 N.D. N.D. +1.0
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 +0.2 N.D. N.D. +1.2
vitamin With vitamins t2 +0.7 +0.0 N.D. N.D. +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.2 -0.0 N.D. N.D. +1.1
control NoPredeControl +0.3 +0.4 N.D. N.D. +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.6 +0.6 N.D. N.D. +0.4
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