Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS13005 and HSERO_RS13010 are separated by 160 nucleotidesHSERO_RS13010 and HSERO_RS13015 are separated by 76 nucleotidesHSERO_RS13015 and HSERO_RS13020 are separated by 10 nucleotidesHSERO_RS13020 and HSERO_RS13025 are separated by 47 nucleotides HSERO_RS13005: HSERO_RS13005 - histidine kinase, at 2,964,068 to 2,965,399 _RS13005 HSERO_RS13010: HSERO_RS13010 - TonB-denpendent receptor, at 2,965,560 to 2,967,761 _RS13010 HSERO_RS13015: HSERO_RS13015 - DNA polymerase III subunit delta', at 2,967,838 to 2,968,875 _RS13015 HSERO_RS13020: HSERO_RS13020 - thymidylate kinase, at 2,968,886 to 2,969,494 _RS13020 HSERO_RS13025: HSERO_RS13025 - aminodeoxychorismate lyase, at 2,969,542 to 2,970,522 _RS13025
Group Condition HSERO_RS13005 HSERO_RS13010 HSERO_RS13015 HSERO_RS13020 HSERO_RS13025
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.2 +0.2 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.1 +0.1 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.0 -0.0 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.0 +0.1 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.2 +0.3 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.9 +0.0 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.2 +0.3 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.0 +0.1 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 -0.3 N.D. N.D. N.D.
carbon source L-Proline (C) -0.9 +0.2 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.8 +0.1 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 +0.1 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 +0.2 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 +0.3 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.6 +0.2 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.7 +0.5 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.6 +0.6 N.D. N.D. N.D.
stress Lomefloxacin 0.012 mM +0.5 -0.3 N.D. N.D. N.D.
supernatant control Vogels_fungal_media; pH 5.5 +0.7 -0.2 N.D. N.D. N.D.
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB +0.7 +0.1 N.D. N.D. N.D.
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X +0.7 +0.2 N.D. N.D. N.D.
supernatant control Vogels_fungal_media 0.1X +0.6 +0.3 N.D. N.D. N.D.
carbon source D-Sorbitol (C) +0.7 +0.2 N.D. N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.7 +0.2 N.D. N.D. N.D.
supernatant control Vogels_fungal_media 0.1X +0.7 +0.3 N.D. N.D. N.D.
supernatant control Vogels_fungal_media; pH 5.5 +0.7 +0.2 N.D. N.D. N.D.
supernatant control Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB +0.9 +0.2 N.D. N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.9 +0.3 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.8 +0.4 N.D. N.D. N.D.
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.9 +0.3 N.D. N.D. N.D.
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