Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 244 experiments or choose conditions or try the comparative fitness browser

500 ntHSERO_RS12915 and HSERO_RS12920 are separated by 51 nucleotidesHSERO_RS12920 and HSERO_RS12925 are separated by 292 nucleotidesHSERO_RS12925 and HSERO_RS12930 are separated by 95 nucleotidesHSERO_RS12930 and HSERO_RS12935 are separated by 236 nucleotides HSERO_RS12915: HSERO_RS12915 - Clp protease proteolytic subunit ClpP, at 2,945,129 to 2,945,755 _RS12915 HSERO_RS12920: HSERO_RS12920 - trigger factor, at 2,945,807 to 2,947,156 _RS12920 HSERO_RS12925: HSERO_RS12925 - catabolite repression CreA protein, at 2,947,449 to 2,947,946 _RS12925 HSERO_RS12930: HSERO_RS12930 - hypothetical protein, at 2,948,042 to 2,948,236 _RS12930 HSERO_RS12935: HSERO_RS12935 - tRNA-Leu, at 2,948,473 to 2,948,559 _RS12935
Group Condition HSERO_RS12915 HSERO_RS12920 HSERO_RS12925 HSERO_RS12930 HSERO_RS12935
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -2.5 -0.6 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -2.3 -0.6 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -2.5 -0.2 N.D. N.D.
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days N.D. -2.5 -0.3 N.D. N.D.
nitrogen source L-Proline (N) N.D. -3.0 +0.2 N.D. N.D.
micoeukaryotes Dictyostellum sp.mixed culture-1 N.D. -2.6 +0.2 N.D. N.D.
micoeukaryotes Acanthamoeba sp., muxed culture-1 N.D. -2.3 -0.1 N.D. N.D.
micoeukaryotes Acanthamoeba sp., muxed culture-2 N.D. -2.4 +0.0 N.D. N.D.
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X N.D. -2.6 +0.2 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -2.3 +0.0 N.D. N.D.
control NoPredeControl N.D. -2.6 +0.3 N.D. N.D.
r2a control R2A control N.D. -1.8 -0.5 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -2.2 +0.0 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -2.4 +0.2 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -2.0 -0.1 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -2.4 +0.3 N.D. N.D.
agar plate interaction control Taped volatile agar plate with no fungus N.D. -1.6 -0.4 N.D. N.D.
carbon source D-Xylose (C) N.D. -1.8 -0.3 N.D. N.D.
supernatant control Vogels_fungal_media; pH 5.5 N.D. -2.1 +0.2 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -2.3 +0.4 N.D. N.D.
stress Thallium(I) acetate 0.001 mg/ml N.D. -1.7 -0.2 N.D. N.D.
r2a control R2A control N.D. -1.7 -0.2 N.D. N.D.
carbon source D-Glucose (C) N.D. -1.3 -0.6 N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X N.D. -1.9 +0.1 N.D. N.D.
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB N.D. -2.0 +0.3 N.D. N.D.
micoeukaryotes Dictyostellum sp.mixed culture-2 N.D. -1.9 +0.3 N.D. N.D.
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X N.D. -1.7 +0.1 N.D. N.D.
stress Lomefloxacin 0.012 mM N.D. -2.0 +0.5 N.D. N.D.
supernatant control Vogels_fungal_media 0.1X N.D. -1.6 +0.3 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -1.6 +0.6 N.D. N.D.
remove
HSERO_RS12915
plot		 remove
HSERO_RS12920
plot		 remove
HSERO_RS12925		 remove
HSERO_RS12930
plot		 remove
HSERO_RS12935
plot