Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS12685	HSERO_RS12690	HSERO_RS12695	HSERO_RS12700	HSERO_RS12705
micoeukaryotes	C.elegans, mixed culture-1	-0.1	-3.1	-0.7	+0.2	+0.1
stress	Lomefloxacin 0.012 mM	-0.6	-0.5	-0.4	-0.0	-1.1
micoeukaryotes	Acanthamoeba sp., muxed culture-1	+0.6	-2.6	-0.3	-0.4	+0.0
stress	nitrate 200 mM	-0.5	-0.2	-0.2	+0.1	-1.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	-1.5	-0.2	+0.1	-0.4
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 3 days	+0.3	-1.7	+0.2	-0.4	-0.7
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 3 days	+0.4	-2.6	+0.0	-0.2	+0.1
carbon source	L-Asparagine (C)	-0.1	-1.7	+0.0	-0.5	+0.5
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 8 days	+0.4	-2.0	-0.0	+0.2	-0.2
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 8 days	-0.2	-1.7	+0.1	-0.4	+0.3
carbon source	D-Galactose (C)	-1.1	-1.2	-0.0	+0.5	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB	-0.4	-0.9	-0.3	+0.9	-0.4
carbon source	Xylitol (C)	-0.4	-1.1	-0.3	+0.2	+0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	-2.9	+0.2	+1.4	+0.2
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	+1.1	-0.6	-0.2	+0.4	-0.6
vitamin	No vitamins t2	+1.2	-0.5	+0.5	-0.3	-0.7
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.9	-0.8	-0.2	+0.3	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.0	+1.6	+0.2	-0.3	-0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.8	-1.0	-0.2	+0.5	+0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3	+1.6	+0.5	+0.0	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.7	+0.3	+0.5	+1.4	-0.4
supernatant control	Vogels_fungal_media; pH 5.5	+0.6	-0.8	-0.2	+1.2	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+1.3	+0.5	+0.3	-0.1	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+1.6	+1.0	+0.4	-0.3	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.7	+1.6	+0.6	-0.5	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+2.3	+0.2	-0.1	+0.1	+0.3
agar plate interaction control	Taped volatile agar plate with no fungus	+1.2	+0.2	+0.5	+0.5	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.7	+1.7	+0.3	-0.3	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.6	+3.9	+0.1	-0.2	+0.1
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.3	+2.8	+0.5	+0.4	+0.6