Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS12670	HSERO_RS12675	HSERO_RS12680	HSERO_RS12685	HSERO_RS12690
micoeukaryotes	C.elegans, mixed culture-1	+0.3	-0.0	-0.2	-0.1	-3.1
carbon source	Xylitol (C)	-0.3	-0.5	-0.1	-0.4	-1.1
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 3 days	-0.0	-0.2	-0.0	+0.4	-2.6
carbon source	D-Galactose (C)	+0.3	+0.0	-0.2	-1.1	-1.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-0.1	+0.2	+0.4	-2.9
micoeukaryotes	Acanthamoeba sp., muxed culture-1	+0.2	+0.3	-0.3	+0.6	-2.6
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 8 days	+0.0	-0.2	+0.1	+0.4	-2.0
nitrogen fixation	D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days	+0.2	-0.2	-0.1	+0.1	-1.8
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 8 days	+0.4	+0.0	+0.1	-0.4	-1.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	-0.6	+0.2	-0.4	-1.0
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 3 days	+0.1	-0.2	+0.0	+0.3	-1.7
micoeukaryotes	Dictyostellum sp.mixed culture-2	+0.0	+0.2	+0.1	+0.2	-2.0
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 8 days	+0.3	+0.0	+0.2	-0.2	-1.7
carbon source	D-Gluconic Acid (C)	+0.6	-0.4	+0.0	-0.5	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.7	-0.1	-0.1	+0.6	+0.2
vitamin	No vitamins t1	-0.2	-0.4	-0.3	+1.2	-0.8
vitamin	With vitamins t1	-0.1	-0.4	-0.4	+1.0	-0.5
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.2	-0.4	-0.1	+0.9	-0.8
carbon source	D-Mannose (C)	+0.6	-0.4	-0.1	-0.6	+0.6
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.3	+0.2	+0.3	+0.8	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3	-0.4	+0.7	-0.3	+1.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.4	-0.1	+0.3	-0.0	+1.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	-0.4	+0.4	+0.7	+0.9
carbon source	Carbon source Phenylacetic 5 mM	-0.3	+0.3	+0.1	+0.4	+1.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.4	+0.2	+0.1	+0.7	+1.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	+0.0	+0.2	+2.3	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	+0.4	+0.3	+1.6	+1.0
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.5	-0.4	+0.1	+0.3	+2.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	+0.2	+0.3	+1.7	+1.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.0	+0.1	+0.0	+0.6	+3.9