Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS12660	HSERO_RS12665	HSERO_RS12670	HSERO_RS12675	HSERO_RS12680
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.0	N.D.	-1.7	-0.1	-0.1
carbon source	L-Lactate (C)	-0.3	N.D.	-0.2	-0.6	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.7	N.D.	+0.2	-0.4	-0.1
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.7	N.D.	+0.2	-0.4	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.8	N.D.	-0.4	+0.2	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	N.D.	+0.2	-0.7	-0.0
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-1.3	N.D.	+0.5	-0.1	-0.1
agar plate interaction control	Taped volatile agar plate with no fungus	-0.7	N.D.	+0.2	-0.3	-0.1
micoeukaryotes	C.elegans, mixed culture-2	-0.9	N.D.	-0.0	+0.3	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.6	N.D.	-0.4	+0.2	+0.1
carbon source	D,L-Lactate (C)	-0.8	N.D.	+0.3	-0.2	+0.1
vitamin	No vitamins t1	+0.4	N.D.	-0.2	-0.4	-0.3
carbon source	D-Sorbitol (C)	+0.2	N.D.	-0.5	-0.3	+0.2
carbon source	D-Lactate (C)	-0.5	N.D.	+0.2	-0.4	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-0.5	N.D.	+0.4	-0.4	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.4	N.D.	-0.4	+0.3	+0.3
carbon source	Carbon source Phenylacetic 5 mM	-0.5	N.D.	-0.3	+0.3	+0.1
stress	A22 0.04 mg/ml	-0.5	N.D.	+0.6	-0.2	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	N.D.	-0.8	+0.1	+0.4
carbon source	D-Mannose (C)	-0.2	N.D.	+0.6	-0.4	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	N.D.	+0.3	-0.6	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.0	N.D.	-0.3	-0.4	+0.7
vitamin	With vitamins t1	+1.0	N.D.	-0.1	-0.4	-0.4
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.5	N.D.	+0.3	+0.2	+0.3
carbon source	D-Glucose (C)	+0.4	N.D.	+0.4	-0.1	-0.4
stress	sodium fluoride 100 mM	-0.2	N.D.	+0.5	-0.3	+0.3
carbon source	Carbon source 2-Deoxy-D-Ribose 5 mM	-0.3	N.D.	+0.8	+0.3	-0.2
carbon source	D-Gluconic Acid (C)	+0.4	N.D.	+0.6	-0.4	+0.0
stress	Lomefloxacin 0.012 mM	+0.5	N.D.	+0.6	-0.2	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.2	N.D.	+0.1	+1.0	-0.0