Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS12580 and HSERO_RS12585 are separated by 83 nucleotidesHSERO_RS12585 and HSERO_RS12590 are separated by 49 nucleotidesHSERO_RS12590 and HSERO_RS12595 are separated by 192 nucleotidesHSERO_RS12595 and HSERO_RS12600 are separated by 64 nucleotides HSERO_RS12580: HSERO_RS12580 - ethanolamine ammonia lyase large subunit, at 2,869,109 to 2,870,515 _RS12580 HSERO_RS12585: HSERO_RS12585 - phosphoserine phosphatase, at 2,870,599 to 2,871,921 _RS12585 HSERO_RS12590: HSERO_RS12590 - ethanolamin permease, at 2,871,971 to 2,873,353 _RS12590 HSERO_RS12595: HSERO_RS12595 - AraC family transcriptional regulator, at 2,873,546 to 2,874,544 _RS12595 HSERO_RS12600: HSERO_RS12600 - hypothetical protein, at 2,874,609 to 2,875,676 _RS12600
Group Condition HSERO_RS12580 HSERO_RS12585 HSERO_RS12590 HSERO_RS12595 HSERO_RS12600
carbon source D-Glucose-6-Phosphate (C) -0.2 -0.5 -0.3 +0.5 -0.6
carbon source D-Galacturonic Acid (C) -0.4 -0.6 -0.3 +0.4 +0.1
carbon source Xylitol (C) -0.2 -0.2 -0.0 +0.5 -0.8
carbon source D-Gluconic Acid (C) -0.1 -0.3 -0.2 +0.5 -0.6
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.2 +0.4 -0.3 -0.5 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4 -0.1 +0.3 +0.2 -0.3
carbon source m-Inositol (C) -0.3 -0.0 -0.5 +0.5 +0.2
plant Control soil assay; outgrowth in LB -0.6 +0.3 +0.1 -0.1 +0.2
stress Lomefloxacin 0.012 mM +0.4 -0.5 -0.1 -0.1 +0.3
carbon source pyruvate (C) +0.0 -0.3 +0.1 +0.5 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 -0.6 +0.2 +0.2 +0.3
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.2 +0.6 -0.3 -0.4 -0.0
carbon source L-Lactate (C) +0.2 -0.2 +0.1 +0.5 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 -0.1 +0.9 -0.4 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 -0.5 +0.3 +0.1 +0.3
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.3 +0.1 +0.1 +0.8 -0.3
carbon source Carbon source Phenylacetic 5 mM -0.1 +0.4 -0.3 +0.1 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.3 -0.5 +0.3 -0.2 +0.5
agar plate interaction control Taped volatile agar plate with no fungus -0.1 -0.2 +0.2 -0.3 +0.8
carbon source D-Xylose (C) +0.3 -0.3 -0.1 +0.6 +0.2
agar plate interaction control Taped volatile agar plate with no fungus -0.1 -0.3 +0.2 +0.1 +0.7
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +0.1 +0.4 -0.2 -0.1 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.3 -0.0 +1.0 +0.2 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.0 +0.8 -0.2 +0.5 -0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 +0.3 +0.8 +0.1 +0.2
stress Sisomicin 0.125 mg/ml +0.5 +0.3 -0.0 -0.0 +0.5
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM -0.1 +0.2 -0.2 +0.9 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +1.1 +0.2 +0.0 +0.4 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5 +0.5 +0.1 +0.1 +0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.0 +0.0 +1.3 +0.6 +0.0
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