Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS12570 and HSERO_RS12575 are separated by 295 nucleotidesHSERO_RS12575 and HSERO_RS12580 overlap by 4 nucleotidesHSERO_RS12580 and HSERO_RS12585 are separated by 83 nucleotidesHSERO_RS12585 and HSERO_RS12590 are separated by 49 nucleotides HSERO_RS12570: HSERO_RS12570 - isocitrate dehydrogenase, at 2,865,719 to 2,867,947 _RS12570 HSERO_RS12575: HSERO_RS12575 - ethanolamine ammonia-lyase small subunit, at 2,868,243 to 2,869,112 _RS12575 HSERO_RS12580: HSERO_RS12580 - ethanolamine ammonia lyase large subunit, at 2,869,109 to 2,870,515 _RS12580 HSERO_RS12585: HSERO_RS12585 - phosphoserine phosphatase, at 2,870,599 to 2,871,921 _RS12585 HSERO_RS12590: HSERO_RS12590 - ethanolamin permease, at 2,871,971 to 2,873,353 _RS12590
Group Condition HSERO_RS12570 HSERO_RS12575 HSERO_RS12580 HSERO_RS12585 HSERO_RS12590
carbon source L-Arabinose (C) N.D. -0.3 -0.1 -0.6 -0.0
carbon source D-Galacturonic Acid (C) N.D. +0.3 -0.4 -0.6 -0.3
carbon source D-Glucose-6-Phosphate (C) N.D. +0.1 -0.2 -0.5 -0.3
plant Control soil assay; outgrowth in LB N.D. -0.5 -0.6 +0.3 +0.1
carbon source D-Ribose (C) N.D. +0.4 -0.2 -0.7 -0.1
carbon source m-Inositol (C) N.D. +0.4 -0.3 -0.0 -0.5
carbon source L-Rhamnose (C) N.D. +0.3 -0.2 +0.0 -0.5
stress Lomefloxacin 0.012 mM N.D. -0.1 +0.4 -0.5 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.1 +0.1 -0.5 +0.3
carbon source D-Galactose (C) N.D. +0.6 -0.1 -0.5 -0.2
carbon source D-Ribose (C) N.D. +0.5 -0.2 -0.2 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.4 -0.5 -0.2 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -0.2 +0.3 -0.5 +0.3
carbon source D-Lactate (C) N.D. +0.3 +0.3 -0.4 -0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. +0.1 +0.2 -0.4 +0.3
carbon source L-Fucose (C) N.D. +0.5 +0.2 -0.2 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.2 -0.4 +0.2 +0.4
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. -0.1 +0.2 +0.6 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -0.2 -0.0 +0.8 -0.2
carbon source a-Ketoglutaric (C) N.D. +0.5 -0.2 +0.3 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.1 -0.3 -0.0 +1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.2 +0.2 -0.1 +0.9
stress Sisomicin 0.125 mg/ml N.D. +0.2 +0.5 +0.3 -0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.3 -0.1 +0.2 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +1.1 +0.0 +0.1 -0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.4 -0.2 +0.3 +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.4 +0.5 +0.5 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.2 +1.1 +0.2 +0.0
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.3 -0.0 +0.0 +1.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.6 +0.3 +0.1 +0.7
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