Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS12545 and HSERO_RS12550 are separated by 0 nucleotidesHSERO_RS12550 and HSERO_RS12555 are separated by 338 nucleotidesHSERO_RS12555 and HSERO_RS12560 are separated by 100 nucleotidesHSERO_RS12560 and HSERO_RS12565 are separated by 3 nucleotides HSERO_RS12545: HSERO_RS12545 - hypothetical protein, at 2,861,598 to 2,861,954 _RS12545 HSERO_RS12550: HSERO_RS12550 - D-lactate dehydrogenase, at 2,861,955 to 2,862,947 _RS12550 HSERO_RS12555: HSERO_RS12555 - major facilitator transporter, at 2,863,286 to 2,864,572 _RS12555 HSERO_RS12560: HSERO_RS12560 - antitoxin, at 2,864,673 to 2,865,074 _RS12560 HSERO_RS12565: HSERO_RS12565 - hypothetical protein, at 2,865,078 to 2,865,380 _RS12565
Group Condition HSERO_RS12545 HSERO_RS12550 HSERO_RS12555 HSERO_RS12560 HSERO_RS12565
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. -0.2 -1.3 -1.3 -0.1
supernatant control Vogels_fungal_media; pH 5.5 N.D. -0.1 -0.8 -1.1 -0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB N.D. +0.2 -0.2 -2.2 +0.1
carbon source pyruvate (C) N.D. -0.5 -0.3 -0.6 -0.4
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.5X; growth supplemented with 0.4X LB N.D. -0.5 -0.4 -0.5 -0.3
carbon source D-Ribose (C) N.D. -0.2 +0.2 -1.5 -0.2
carbon source D-Gluconic Acid (C) N.D. -0.3 +0.1 -0.8 -0.7
carbon source L-Lactate (C) N.D. -0.8 -0.1 -0.7 +0.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB N.D. -0.0 -0.5 -1.0 +0.1
carbon source L-Lactate (C) N.D. -0.3 +0.3 -0.8 -0.5
carbon source L-Asparagine (C) N.D. -0.4 +0.2 -0.7 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.1 -0.2 -1.2 +0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X N.D. -0.2 -0.9 +0.5 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.2 +0.2 -1.4 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.3 +0.1 -1.0 -0.2
stress Sisomicin 0.125 mg/ml N.D. -0.2 +0.5 -1.0 -0.2
supernatant control Vogels_fungal_media; pH 5.5 N.D. +0.1 -0.8 -0.4 +0.3
carbon source pyruvate (C) N.D. -0.3 +0.2 -0.9 +0.3
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. +0.3 +0.2 -0.6 -0.5
stress Fusidic 0.025 mg/ml N.D. +0.0 +0.4 -0.6 -0.6
carbon source Carbon source D-Glucose 20 mM N.D. +0.1 +0.5 -0.5 -0.6
carbon source L-Rhamnose (C) N.D. -0.1 +0.3 -0.9 +0.3
carbon source D-Sorbitol (C) N.D. -0.3 +0.3 -0.7 +0.3
stress Nickel (II) chloride 0.6 mM N.D. +0.4 -0.2 +0.6 -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.5 +0.0 -0.9 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.4 +0.0 -1.3 +1.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.4 +0.8 -0.8 +0.3
carbon source L-Fucose (C) N.D. -0.3 +0.4 +0.6 +0.3
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. +0.7 +0.3 +0.4 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.2 -0.1 +1.3 +0.6
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