Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS12430 and HSERO_RS12435 overlap by 4 nucleotidesHSERO_RS12435 and HSERO_RS12440 are separated by 255 nucleotidesHSERO_RS12440 and HSERO_RS12445 are separated by 24 nucleotidesHSERO_RS12445 and HSERO_RS12450 are separated by 276 nucleotides HSERO_RS12430: HSERO_RS12430 - 2-hydroxyacid dehydrogenase, at 2,825,086 to 2,826,045 _RS12430 HSERO_RS12435: HSERO_RS12435 - dioxygenase, at 2,826,042 to 2,826,458 _RS12435 HSERO_RS12440: HSERO_RS12440 - universal stress protein, at 2,826,714 to 2,827,538 _RS12440 HSERO_RS12445: HSERO_RS12445 - peptidase, at 2,827,563 to 2,828,813 _RS12445 HSERO_RS12450: HSERO_RS12450 - histidine kinase, at 2,829,090 to 2,832,890 _RS12450
Group Condition HSERO_RS12430 HSERO_RS12435 HSERO_RS12440 HSERO_RS12445 HSERO_RS12450
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. -0.9 -0.9 +0.1 -0.2
plant Control soil assay; outgrowth in LB N.D. -1.1 -0.6 +0.0 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.8 -0.2 +0.3 -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -0.8 +0.1 +0.3 -1.1
supernatant control Vogels_fungal_media; pH 5.5 N.D. -1.2 +0.0 -0.2 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.3 -0.4 -0.2 -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -0.5 +0.2 -0.2 -1.0
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.7 -0.2 -0.2 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.5 +0.1 +0.0 -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.2 +0.1 -0.3 -1.2
carbon source D-Ribose (C) N.D. -0.5 -0.7 -0.0 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -0.4 +0.0 +0.2 -0.8
carbon source L-Rhamnose (C) N.D. -0.4 -0.5 -0.3 +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.7 +0.1 +0.2 -0.5
plant Control soil assay; outgrowth in LB N.D. +0.5 -0.6 -0.3 -0.2
carbon source D-Sorbitol (C) N.D. +0.2 -0.5 -0.6 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.5 -0.1 -0.3 -0.6
carbon source D-Galactose (C) N.D. +0.2 -0.5 -0.6 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.5 +0.0 -0.0 -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.6 +0.2 -0.3 -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.4 +0.3 +0.1 -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.2 +0.4 +0.1 -1.0
stress sodium fluoride 100 mM N.D. -0.6 -0.3 +0.4 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. +0.3 +0.6 -0.1 -0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.2 +0.9 +0.2 -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. +0.5 +0.3 +0.4 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +1.1 -0.1 +0.4 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +2.4 -0.2 +0.0 -0.9
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. +1.1 +0.0 +0.4 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.7 +1.7 +0.5 -0.5
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