Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS12265 and HSERO_RS12270 are separated by 228 nucleotidesHSERO_RS12270 and HSERO_RS12275 overlap by 4 nucleotidesHSERO_RS12275 and HSERO_RS12280 overlap by 4 nucleotidesHSERO_RS12280 and HSERO_RS12285 are separated by 46 nucleotides HSERO_RS12265: HSERO_RS12265 - histidine kinase, at 2,784,209 to 2,785,786 _RS12265 HSERO_RS12270: HSERO_RS12270 - ABC transporter, at 2,786,015 to 2,786,716 _RS12270 HSERO_RS12275: HSERO_RS12275 - ABC transporter, at 2,786,713 to 2,787,474 _RS12275 HSERO_RS12280: HSERO_RS12280 - ABC transporter permease, at 2,787,471 to 2,789,357 _RS12280 HSERO_RS12285: HSERO_RS12285 - ABC transporter substrate-binding protein, at 2,789,404 to 2,790,618 _RS12285
Group Condition HSERO_RS12265 HSERO_RS12270 HSERO_RS12275 HSERO_RS12280 HSERO_RS12285
nitrogen fixation L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days +0.0 -0.5 -0.6 -0.7 -0.5
nitrogen fixation L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days +0.0 -0.4 -0.7 -0.5 -0.6
control NoPredeControl -0.3 -1.0 -0.4 -0.5 +0.5
micoeukaryotes Acanthamoeba sp., muxed culture-1 -0.0 -1.3 +0.2 -0.0 -0.1
stress Lomefloxacin 0.012 mM +0.3 -0.3 -0.3 -0.6 -0.2
carbon source L-Rhamnose (C) -0.4 -0.9 +0.1 +0.3 -0.1
carbon source L-Arabinose (C) -0.3 +0.3 -0.4 +0.2 -0.4
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.3 -0.5 -0.4 +0.7 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.3 -0.7 -0.0 +0.5 -0.3
carbon source Glycerol (C) +0.4 -0.5 -0.1 +0.3 -0.4
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X +0.3 +0.1 +0.3 +0.2 -0.7
stress Cobalt chloride 0.2 mM +0.7 -0.5 +0.3 +0.2 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4 -0.7 +0.0 +0.1 +0.8
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.2 +1.3 +0.0 -0.0 -0.4
carbon source D-Galactose (C) +0.2 +0.6 -0.2 -0.4 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 -0.2 -0.3 +1.2 +0.0
stress Thallium(I) acetate 0.001 mg/ml +0.2 +0.3 -0.3 +0.7 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.2 +1.1 -0.0 -0.5 +0.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X +0.5 -0.5 +0.3 +0.3 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 -0.5 +0.8 +0.4 +0.2
stress nitrate 200 mM +0.1 +0.7 -0.0 +0.6 -0.3
carbon source Xylitol (C) +0.3 +1.1 +0.2 -0.4 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 -0.7 +0.2 +1.1 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 +1.8 -0.5 +0.0 -0.0
agar plate interaction control Taped volatile agar plate with no fungus -0.0 +1.2 -0.2 +0.4 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +0.3 -0.1 +1.4 -0.1
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.7 +0.3 +0.3 +0.3 +0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +0.3 +0.1 +0.5 +0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.1 +0.1 +0.7 +0.6 +1.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.2 +2.2 -0.3 +0.1 +0.5
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