Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS11865	HSERO_RS11870	HSERO_RS11875	HSERO_RS11880	HSERO_RS11885
control	NoPredeControl	-0.2	+0.1	-0.0	-0.2	-3.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.4	-0.4	-0.3	-1.4	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.7	-0.4	-0.2	-0.3	-1.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	-0.2	+0.0	-0.5	-1.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	+0.3	+0.2	-0.4	-2.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.7	-0.5	-0.2	-0.6	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.1	-0.4	-0.1	-0.2	-1.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.5	-0.5	-0.1	-0.9	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.3	-0.1	+0.2	-0.9	-0.8
carbon source	L-Arabinose (C)	+0.2	+0.2	+0.2	-0.5	-1.7
carbon source	D-Galactose (C)	+0.0	-0.3	+0.3	-0.7	-1.0
carbon source	L-Arabinose (C)	+0.6	+0.4	+0.4	+0.1	-2.9
carbon source	D-Glucose (C)	-0.0	-0.6	-0.1	+1.1	-1.3
carbon source	L-Fucose (C)	+0.2	-0.2	-0.3	+0.5	-1.1
carbon source	a-Ketoglutaric (C)	+0.3	-0.0	+0.4	-0.1	-1.4
micoeukaryotes	C.elegans, mixed culture-1	-0.2	-0.3	-0.4	-0.9	+1.2
carbon source	Xylitol (C)	+0.2	-0.4	+0.2	+0.6	-1.1
carbon source	L-Rhamnose (C)	-0.0	+0.3	+0.4	+0.7	-1.8
plant	Control soil assay; outgrowth in LB	+0.7	+0.4	+0.0	-0.9	-0.6
carbon source	Xylitol (C)	-0.1	-0.3	+0.2	+0.9	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+1.1	-0.3	+0.0	-0.4	-0.4
nutrient	Min media with glucose	+0.2	+0.3	-0.1	+0.7	-0.9
carbon source	D-Sorbitol (C)	+0.2	+0.1	+0.4	+0.7	-1.1
carbon source	D-Ribose (C)	+0.4	+0.2	+0.1	+0.9	-1.3
carbon source	D-Xylose (C)	+0.7	+0.1	-0.1	+0.7	-0.8
carbon source	D-Glucose-6-Phosphate (C)	+0.1	+0.6	+0.3	+0.5	-0.9
carbon source	D-Galactose (C)	+0.3	+0.5	+0.2	+0.5	-0.7
carbon source	L-Fucose (C)	-0.2	+0.6	+0.2	+0.8	-0.5
stress	Sisomicin 0.125 mg/ml	+0.2	+0.7	-0.2	-0.4	+1.1
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.6	-0.1	+0.3	+1.1	+2.2