Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

Or view all 244 experiments or choose conditions or try the comparative fitness browser

Group	Condition	HSERO_RS11715	HSERO_RS11720	HSERO_RS11725	HSERO_RS11735	HSERO_RS11740
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 3 days	+0.1	-0.2	-0.3	-0.3	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.5	+0.2	-0.0	-0.1	-0.8
plant	Control soil assay; outgrowth in LB	+0.2	-0.3	-0.4	-0.3	-0.3
carbon source	L-Arabinose (C)	-0.6	+0.2	-0.4	-0.1	-0.1
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.3	-0.1	-0.5	+0.2	-0.3
supernatant control	Vogels_fungal_media; pH 5.5	-0.5	-0.6	+0.7	-0.1	-0.1
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.7	-0.0	-0.3	+0.0	+0.3
nitrogen source	L-Proline (N)	+0.3	-0.3	-0.6	+0.1	+0.3
carbon source	D-Xylose (C)	+0.4	-0.0	+0.0	+0.2	-0.8
carbon source	Carbon source 2-Deoxy-D-Ribose 5 mM	-0.2	-0.5	+0.2	-0.0	+0.5
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.7	-0.1	+0.0	-0.1	-0.4
carbon source	D-Galacturonic Acid (C)	+0.5	-0.2	-0.4	+0.0	+0.3
stress	nitrate 200 mM	+0.3	-0.0	-0.6	+0.1	+0.6
stress	Cobalt chloride 0.2 mM	+0.4	-0.1	-0.4	-0.0	+0.6
stress	A22 0.04 mg/ml	+0.5	-0.4	-0.2	+0.0	+0.6
agar plate interaction control	Taped volatile agar plate with no fungus	-0.4	+0.8	-0.0	+0.1	+0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.6	+0.4	-0.3	+0.0	-0.1
carbon source	D-Mannose (C)	+0.6	-0.1	-0.3	+0.0	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	+1.1	+0.0	+0.0	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.6	+0.5	-0.2	+0.1	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.2	+0.4	-0.3	+0.0	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-0.3	+0.5	-0.0	+0.8
stress	sodium fluoride 100 mM	+0.5	+0.3	+0.0	+0.1	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	+0.5	+0.6	+0.2	-0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.0	+1.0	+0.3	+0.1	+0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB	+0.2	+0.4	+0.4	+0.1	+0.4
r2a control	R2A control	+0.6	+0.4	+0.4	+0.1	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.3	+0.3	+1.1	+0.1	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.2X	+0.2	+0.6	+0.3	+0.2	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.3	+0.3	+0.6	+0.2	+1.2