Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS11160 and HSERO_RS11165 are separated by 95 nucleotidesHSERO_RS11165 and HSERO_RS11170 are separated by 55 nucleotidesHSERO_RS11170 and HSERO_RS11175 are separated by 16 nucleotidesHSERO_RS11175 and HSERO_RS11180 overlap by 47 nucleotides HSERO_RS11160: HSERO_RS11160 - glutamine amidotransferase, at 2,519,779 to 2,520,498 _RS11160 HSERO_RS11165: HSERO_RS11165 - arylesterase, at 2,520,594 to 2,521,214 _RS11165 HSERO_RS11170: HSERO_RS11170 - ABC transporter ATP-binding protein, at 2,521,270 to 2,521,974 _RS11170 HSERO_RS11175: HSERO_RS11175 - multidrug DMT transporter permease, at 2,521,991 to 2,522,935 _RS11175 HSERO_RS11180: HSERO_RS11180 - sugar kinase, at 2,522,889 to 2,524,457 _RS11180
Group Condition HSERO_RS11160 HSERO_RS11165 HSERO_RS11170 HSERO_RS11175 HSERO_RS11180
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 -0.4 -0.4 -0.4 -0.4
stress Lomefloxacin 0.012 mM -0.4 +0.4 -1.3 -0.4 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 +0.3 -1.6 +0.4 -0.2
stress Sisomicin 0.125 mg/ml -0.7 +0.2 -0.1 -0.7 -0.4
plant Control soil assay; outgrowth in LB -0.6 -0.4 -0.8 -0.2 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 -0.1 -1.6 -0.1 +0.2
stress Cobalt chloride 0.2 mM +0.6 -0.3 -0.8 -0.3 -0.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.2 -0.1 +0.5 -0.8 -0.5
carbon source L-Arabinose (C) -1.1 +0.3 -0.6 +0.1 +0.4
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -1.3 +0.0 +0.3 +0.2 +0.3
stress Fusidic 0.025 mg/ml +0.6 -0.6 +0.5 -0.1 -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.7 +0.3 -0.7 +0.2 -0.2
carbon source D-Galacturonic Acid (C) +0.9 -0.6 +0.4 +0.1 -0.6
carbon source m-Inositol (C) +0.5 -0.6 +0.8 -0.1 -0.3
carbon source D-Glucose (C) -0.9 +0.1 +0.7 +0.3 +0.2
carbon source D-Mannose (C) +1.1 +0.2 -0.8 +0.1 -0.2
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.3 +0.7 -0.6 +0.2 -0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 -0.5 +0.2 +0.4 +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +1.3 +0.1 -0.7 -0.1 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.0 +0.4 -0.5 +0.1 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.5 +0.2 -0.2 -0.2 +0.1
carbon source L-Fucose (C) +0.5 -0.5 +1.6 -0.0 -0.1
carbon source Glycerol (C) +0.8 +0.1 +0.9 -0.1 -0.2
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.3 -0.1 +2.1 -0.2 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.3 +0.3 -0.5 +0.4 +1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.7 -0.1 -0.5 +0.0 +1.5
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.3 +0.1 +1.0 +0.3 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 +0.7 -0.6 +0.2 +1.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.6 +1.1 -0.2 +0.5 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.4 +0.2 +0.7 +0.5 +0.7
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