Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS10735 and HSERO_RS10740 are separated by 233 nucleotidesHSERO_RS10740 and HSERO_RS10745 are separated by 77 nucleotidesHSERO_RS10745 and HSERO_RS10750 are separated by 15 nucleotidesHSERO_RS10750 and HSERO_RS10755 are separated by 22 nucleotides HSERO_RS10735: HSERO_RS10735 - major facilitator transporter, at 2,413,401 to 2,414,672 _RS10735 HSERO_RS10740: HSERO_RS10740 - alanine racemase, at 2,414,906 to 2,415,985 _RS10740 HSERO_RS10745: HSERO_RS10745 - DNA repair protein RadA, at 2,416,063 to 2,417,448 _RS10745 HSERO_RS10750: HSERO_RS10750 - hypothetical protein, at 2,417,464 to 2,417,994 _RS10750 HSERO_RS10755: HSERO_RS10755 - sensor histidine kinase, at 2,418,017 to 2,419,384 _RS10755
Group Condition HSERO_RS10735 HSERO_RS10740 HSERO_RS10745 HSERO_RS10750 HSERO_RS10755
stress Cisplatin 0.003 mg/ml N.D. N.D. -2.8 +0.3 N.D.
stress Lomefloxacin 0.012 mM N.D. N.D. -1.5 -0.9 N.D.
supernatant control Vogels_fungal_media; pH 5.5 N.D. N.D. -1.2 -0.9 N.D.
carbon source D-Galacturonic Acid (C) N.D. N.D. -0.6 -1.1 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. N.D. -0.6 -0.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. -0.2 -1.0 N.D.
stress Sisomicin 0.125 mg/ml N.D. N.D. -0.4 -0.8 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. N.D. -0.7 -0.5 N.D.
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 3 days N.D. N.D. -0.6 -0.6 N.D.
carbon source L-Rhamnose (C) N.D. N.D. -0.2 -0.9 N.D.
vitamin With vitamins t2 N.D. N.D. -0.2 -0.9 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. -0.0 -1.1 N.D.
nitrogen source nitrate (N); high aeration N.D. N.D. -0.4 -0.7 N.D.
carbon source D-Glucose (C) N.D. N.D. -0.3 -0.7 N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. N.D. -0.1 -0.9 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -0.8 +0.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. +0.7 -0.6 N.D.
carbon source L-Asparagine (C) N.D. N.D. -0.5 +0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -0.6 +0.8 N.D.
stress nitrate 200 mM N.D. N.D. -0.4 +0.8 N.D.
carbon source D-Galactose (C) N.D. N.D. -0.6 +1.0 N.D.
carbon source D,L-Lactate (C) N.D. N.D. -0.3 +0.8 N.D.
carbon source L-Rhamnose (C) N.D. N.D. -0.3 +0.8 N.D.
carbon source D,L-Lactate (C) N.D. N.D. -0.4 +1.0 N.D.
carbon source D-Lactate (C) N.D. N.D. -0.4 +1.1 N.D.
carbon source L-Proline (C) N.D. N.D. -0.1 +0.9 N.D.
carbon source D-Glucose-6-Phosphate (C) N.D. N.D. -0.3 +1.0 N.D.
carbon source L-Asparagine (C) N.D. N.D. +0.1 +1.0 N.D.
carbon source L-Fucose (C) N.D. N.D. +0.1 +1.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. -0.1 +2.1 N.D.
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