Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS10655 and HSERO_RS10660 are separated by 153 nucleotidesHSERO_RS10660 and HSERO_RS10665 overlap by 4 nucleotidesHSERO_RS10665 and HSERO_RS10670 are separated by 142 nucleotidesHSERO_RS10670 and HSERO_RS10675 are separated by 5 nucleotides HSERO_RS10655: HSERO_RS10655 - ribonuclease PH, at 2,398,069 to 2,398,797 _RS10655 HSERO_RS10660: HSERO_RS10660 - nucleoside-triphosphate diphosphatase, at 2,398,951 to 2,399,541 _RS10660 HSERO_RS10665: HSERO_RS10665 - coproporphyrinogen III oxidase, at 2,399,538 to 2,400,782 _RS10665 HSERO_RS10670: HSERO_RS10670 - signal transduction protein, at 2,400,925 to 2,402,124 _RS10670 HSERO_RS10675: HSERO_RS10675 - diguanylate cyclase, at 2,402,130 to 2,404,181 _RS10675
Group Condition HSERO_RS10655 HSERO_RS10660 HSERO_RS10665 HSERO_RS10670 HSERO_RS10675
control NoPredeControl -0.3 -1.5 -0.2 -1.1 -0.4
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 -0.1 -0.2 -1.7 +0.1
supernatant control:fungal media R2A with Vogels_fungal_media 0.8X +0.4 -1.5 -0.5 -0.2 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.0 -1.2 -0.5 -0.3 +0.6
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.5 -1.2 -0.3 +0.5 +0.0
carbon source D-Glucose (C) -1.0 +0.1 +0.5 -1.1 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.5 -0.9 -0.3 +0.7 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 -0.5 -0.7 +0.5 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4 -1.0 +0.2 +0.4 +0.4
carbon source D-Gluconic Acid (C) -0.3 +0.3 +0.8 -1.3 +0.0
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.7 -1.1 -0.4 -0.0 +2.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.4 -1.0 -0.5 +0.7 +0.2
micoeukaryotes Acanthamoeba sp., muxed culture-1 -0.3 -0.4 +0.3 -0.6 +0.9
carbon source Xylitol (C) -0.1 -0.1 +0.9 -1.2 +0.5
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days -1.2 -0.3 +0.2 +0.3 +1.1
stress Fusidic 0.025 mg/ml -0.1 -0.8 +1.0 +0.3 -0.0
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days -0.8 -0.3 +0.3 +0.4 +1.1
stress nitrate 200 mM -0.6 +0.3 +0.1 +1.3 +0.1
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.6 +0.0 +0.1 +0.8 +0.9
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.1 -0.5 -0.2 +1.7 +0.4
carbon source Glycerol (C) +0.3 +0.4 +1.3 -0.5 +0.2
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days -0.3 -0.1 +0.6 +0.4 +1.1
carbon source m-Inositol (C) +0.7 +0.4 +1.0 -0.5 +0.3
carbon source m-Inositol (C) +0.5 +0.7 +0.8 +0.3 +0.2
stress Thallium(I) acetate 0.001 mg/ml -0.1 +0.7 +1.4 +0.7 -0.0
stress Sisomicin 0.125 mg/ml +0.4 +0.8 +1.2 +0.0 +0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.0 +3.4 -0.3 -0.2 +0.1
stress Lomefloxacin 0.012 mM +0.3 +1.1 +0.8 +0.9 +0.1
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days +0.1 +0.1 +0.6 +0.6 +2.3
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days -0.3 -0.1 +0.5 +0.8 +2.9
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