Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS10600	HSERO_RS10605	HSERO_RS10610	HSERO_RS10615	HSERO_RS10620
stress	Lomefloxacin 0.012 mM	-1.6	-3.8	+0.0	-0.3	-0.1
carbon source	D-Ribose (C)	-0.6	-1.8	-0.1	-0.0	-0.2
carbon source	L-Proline (C)	+0.0	-0.4	-0.3	-0.5	-1.3
carbon source	L-Proline (C)	-0.3	-0.3	+0.4	-0.6	-1.4
carbon source	D-Lactate (C)	-0.0	-0.8	-0.1	+0.3	-1.1
carbon source	Xylitol (C)	+0.1	-1.7	+0.2	-0.2	-0.2
carbon source	D-Xylose (C)	+0.4	-1.2	-0.4	+0.0	-0.4
carbon source	Glycerol (C)	+0.6	-1.0	-0.2	-0.1	-0.5
carbon source	L-Rhamnose (C)	-0.1	-0.9	+0.4	+0.3	-0.7
nitrogen fixation	L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days	+0.6	+0.0	+0.0	-1.5	+0.4
stress	Cisplatin 0.003 mg/ml	-0.7	+0.9	-0.4	-0.4	+0.1
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 3 days	+0.7	-0.7	-0.3	+0.3	+0.3
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 8 days	+1.4	-0.1	-0.8	-0.2	+0.3
agar plate interaction control	Taped volatile agar plate with no fungus	+0.3	-0.8	+0.5	+0.5	+0.1
micoeukaryotes	C.elegans, mixed culture-2	+1.3	+0.4	-0.3	+0.2	-0.6
micoeukaryotes	Dictyostellum sp.mixed culture-1	+1.5	+0.6	+0.2	-0.3	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+2.0	+0.1	-0.0	+0.1	-0.1
micoeukaryotes	Acanthamoeba sp., muxed culture-2	+0.9	+0.6	+0.2	-0.1	+0.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.8	-0.2	+0.2	+0.4	+0.1
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.2	+2.0	+0.4	+0.1	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.9	+0.4	+0.0	+0.2	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+2.5	-0.1	-0.1	+0.1	+0.2
micoeukaryotes	Dictyostellum sp.mixed culture-2	+1.6	+0.5	+0.0	+0.0	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+3.1	-0.1	-0.2	-0.1	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+3.2	-0.2	-0.2	+0.2	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+3.8	+0.4	-0.4	+0.3	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+2.8	+0.1	-0.0	+0.3	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+4.9	-0.2	-0.1	+0.4	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+5.1	-0.1	+0.1	-0.1	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+5.7	+0.3	-0.0	+0.2	-0.1