Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS10585	HSERO_RS10590	HSERO_RS10595	HSERO_RS10600	HSERO_RS10605
stress	Lomefloxacin 0.012 mM	N.D.	+0.1	-0.1	-1.6	-3.8
carbon source	L-Lactate (C)	N.D.	-0.0	-0.1	-0.6	-1.2
carbon source	D-Ribose (C)	N.D.	+0.3	+0.2	-0.6	-1.8
stress	Sisomicin 0.125 mg/ml	N.D.	+0.1	+0.2	-0.1	-1.7
agar plate interaction control	Taped volatile agar plate with no fungus	N.D.	+0.0	-0.8	+0.3	-0.8
carbon source	D-Sorbitol (C)	N.D.	+0.2	+0.3	-0.4	-1.1
carbon source	Xylitol (C)	N.D.	+0.3	+0.5	+0.1	-1.7
carbon source	D-Glucose-6-Phosphate (C)	N.D.	+0.3	+0.4	+0.6	-0.7
stress	Cisplatin 0.003 mg/ml	N.D.	+0.5	-0.0	-0.7	+0.9
micoeukaryotes	C.elegans, mixed culture-2	N.D.	-0.4	-0.1	+1.3	+0.4
carbon source	D-Glucose (C)	N.D.	+0.6	+0.3	+1.1	-0.4
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 8 days	N.D.	+0.1	+0.3	+1.4	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.0	+0.0	+1.8	-0.2
micoeukaryotes	Acanthamoeba sp., muxed culture-1	N.D.	-0.0	+0.6	+0.9	+0.3
micoeukaryotes	Acanthamoeba sp., muxed culture-2	N.D.	+0.0	+0.4	+0.9	+0.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.2	+0.6	+1.9	-0.1
micoeukaryotes	Dictyostellum sp.mixed culture-1	N.D.	-0.1	+0.3	+1.5	+0.6
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	N.D.	+0.1	-0.0	+0.2	+2.0
micoeukaryotes	C.elegans, mixed culture-1	N.D.	-0.1	+1.0	+1.6	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.0	+0.5	+2.0	+0.1
micoeukaryotes	Dictyostellum sp.mixed culture-2	N.D.	-0.0	+0.5	+1.6	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.2	+0.6	+1.9	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.0	+0.7	+2.5	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.0	+0.7	+2.8	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.1	+1.0	+3.2	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.1	+1.3	+3.1	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.4	+0.7	+3.8	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.2	+1.3	+4.9	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.2	+1.4	+5.1	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	+0.1	+1.2	+5.7	+0.3