Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

Or view all 244 experiments or choose conditions or try the comparative fitness browser

Group	Condition	HSERO_RS10235	HSERO_RS10240	HSERO_RS10245	HSERO_RS10250	HSERO_RS10255
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 8 days	+0.3	-0.2	+0.1	-5.2	-5.6
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 8 days	+0.2	-0.1	-0.0	-6.2	-4.4
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 3 days	-0.0	-0.1	-0.0	-6.0	-4.2
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 8 days	+0.2	+0.0	+0.2	-5.5	-4.6
nitrogen fixation	L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days	+0.2	-0.1	+0.0	-4.8	-4.7
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 8 days	+0.0	+0.1	-0.1	-4.8	-3.7
nitrogen fixation	L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days	+0.1	-0.1	+0.0	-4.2	-4.0
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 3 days	-0.0	+0.1	-0.0	-3.8	-4.1
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 3 days	+0.2	+0.1	-0.2	-4.0	-3.7
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 3 days	-0.1	+0.0	-0.1	-4.2	-3.1
nitrogen fixation	D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days	+0.1	+0.3	+0.2	-3.9	-3.6
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7	+0.2	-0.1	+1.5	+1.2
vitamin	With vitamins t1	-0.2	-0.3	+0.1	+1.4	+1.9
carbon source	Carbon source 2-Deoxy-D-Ribose 5 mM	-0.0	-0.3	-0.2	+1.6	+1.9
carbon source	L-Fucose (C)	+0.7	-0.5	+0.1	+1.2	+1.7
carbon source	L-Fucose (C)	+0.2	-0.3	-0.4	+1.6	+2.1
stress	Cisplatin 0.003 mg/ml	+0.2	-0.1	-0.3	+1.4	+2.2
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.2	+0.2	+0.1	+1.5	+1.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.0	+0.3	-0.0	+2.2	+1.3
carbon source	D-Mannose (C)	-0.1	-0.1	+0.1	+1.9	+2.0
vitamin	No vitamins t1	-0.1	-0.3	+0.3	+1.8	+2.1
micoeukaryotes	Dictyostellum sp.mixed culture-1	+0.4	-0.1	-0.1	+1.7	+1.9
carbon source	Glycerol (C)	-0.0	+0.3	-0.3	+1.6	+2.3
carbon source	D-Mannose (C)	-0.0	-0.1	+0.1	+1.9	+2.0
micoeukaryotes	Dictyostellum sp.mixed culture-2	+0.2	+0.2	+0.2	+1.4	+1.9
nitrogen source	L-Proline (N)	+0.2	+0.3	-0.0	+1.6	+2.2
carbon source	L-Proline (C)	+0.2	+0.1	-0.3	+2.3	+2.6
micoeukaryotes	C.elegans, mixed culture-2	+0.3	-0.0	-0.3	+2.5	+3.1
control	NoPredeControl	+0.2	-0.3	-0.1	+2.9	+3.2
control	NoPredeControl	+0.2	+0.5	+0.4	+2.8	+3.1