Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS10170 and HSERO_RS10175 are separated by 164 nucleotidesHSERO_RS10175 and HSERO_RS10180 are separated by 183 nucleotidesHSERO_RS10180 and HSERO_RS10185 are separated by 6 nucleotidesHSERO_RS10185 and HSERO_RS10190 are separated by 10 nucleotides HSERO_RS10170: HSERO_RS10170 - flagellar biosynthesis anti-sigma factor FlgM, at 2,295,766 to 2,296,083 _RS10170 HSERO_RS10175: HSERO_RS10175 - flagellar basal body P-ring biosynthesis protein FlgA, at 2,296,248 to 2,297,012 _RS10175 HSERO_RS10180: HSERO_RS10180 - flagellar biosynthesis protein FlgB, at 2,297,196 to 2,297,624 _RS10180 HSERO_RS10185: HSERO_RS10185 - flagellar basal body rod protein FlgC, at 2,297,631 to 2,298,035 _RS10185 HSERO_RS10190: HSERO_RS10190 - flagellar basal body rod modification protein FlgD, at 2,298,046 to 2,298,768 _RS10190
Group Condition HSERO_RS10170 HSERO_RS10175 HSERO_RS10180 HSERO_RS10185 HSERO_RS10190
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 3 days N.D. -5.6 -6.4 -6.2 -5.8
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days N.D. -5.1 -5.2 -5.6 -5.7
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days N.D. -5.5 -5.2 -5.3 -5.0
nitrogen fixation L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days N.D. -4.9 -4.2 -4.7 -6.1
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days N.D. -5.1 -5.3 -4.8 -4.5
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days N.D. -5.7 -4.1 -5.2 -4.5
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 3 days N.D. -4.3 -6.5 -4.0 -4.1
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days N.D. -4.0 -5.3 -4.2 -4.2
nitrogen fixation L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days N.D. -4.2 -4.0 -4.5 -4.9
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 3 days N.D. -4.2 -4.0 -4.0 -3.5
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 3 days N.D. -4.0 -2.7 -4.2 -3.9
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI N.D. -1.4 -2.5 -2.5 -3.0
stress Lomefloxacin 0.012 mM N.D. -1.9 -2.4 -1.2 -1.1
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI N.D. -1.0 -1.9 -1.4 -2.0
stress Cobalt chloride 0.2 mM N.D. -1.3 -1.2 -1.4 -2.0
micoeukaryotes Dictyostellum sp.mixed culture-2 N.D. +1.2 +1.6 +1.2 +1.1
carbon source Glycerol (C) N.D. +1.7 +1.3 +1.1 +0.9
carbon source D-Lactate (C) N.D. +1.4 +1.0 +1.5 +1.3
carbon source D,L-Lactate (C) N.D. +1.7 +0.9 +1.3 +1.3
carbon source D,L-Lactate (C) N.D. +1.9 +1.0 +1.6 +1.6
carbon source L-Fucose (C) N.D. +1.5 +1.3 +1.4 +1.9
micoeukaryotes Dictyostellum sp.mixed culture-1 N.D. +1.7 +1.4 +1.5 +1.6
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days N.D. +1.7 +1.7 +1.7 +1.9
nitrogen source L-Proline (N) N.D. +2.0 +2.6 +1.8 +1.1
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM N.D. +1.8 +1.5 +2.0 +2.1
control NoPredeControl N.D. +2.3 +2.6 +1.8 +1.3
carbon source L-Proline (C) N.D. +2.4 +2.1 +1.8 +1.7
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM N.D. +2.1 +1.5 +2.2 +2.2
micoeukaryotes C.elegans, mixed culture-2 N.D. +2.4 +2.0 +2.1 +1.9
control NoPredeControl N.D. +3.0 +2.9 +2.7 +2.6
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