Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS10125 and HSERO_RS10130 are separated by 173 nucleotidesHSERO_RS10130 and HSERO_RS10135 overlap by 8 nucleotidesHSERO_RS10135 and HSERO_RS10140 are separated by 274 nucleotidesHSERO_RS10140 and HSERO_RS10145 are separated by 2 nucleotides HSERO_RS10125: HSERO_RS10125 - chemotaxis protein, at 2,286,267 to 2,287,346 _RS10125 HSERO_RS10130: HSERO_RS10130 - chemotaxis protein CheY, at 2,287,520 to 2,287,915 _RS10130 HSERO_RS10135: HSERO_RS10135 - chemotaxis protein CheZ, at 2,287,908 to 2,288,567 _RS10135 HSERO_RS10140: HSERO_RS10140 - flagellar biosynthesis protein FlhB, at 2,288,842 to 2,290,017 _RS10140 HSERO_RS10145: HSERO_RS10145 - flagellar biosynthesis protein FlhA, at 2,290,020 to 2,292,137 _RS10145
Group Condition HSERO_RS10125 HSERO_RS10130 HSERO_RS10135 HSERO_RS10140 HSERO_RS10145
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 3 days -5.8 N.D. +0.7 -4.7 -5.5
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days -4.8 N.D. -0.3 -4.7 -5.1
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days -5.3 N.D. -0.4 -4.5 -4.6
nitrogen fixation L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days -4.9 N.D. +0.6 -4.4 -4.7
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days -6.0 N.D. +0.5 -3.8 -4.0
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days -3.5 N.D. -0.1 -4.4 -4.9
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 8 days -3.5 N.D. +0.3 -4.4 -5.1
nitrogen fixation L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 8 days -4.8 N.D. +0.3 -3.6 -4.1
nitrogen fixation control D-Glucose (C) with ammonium chloride; anaerobic; 3 days -4.8 N.D. +0.2 -3.3 -3.7
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 3 days -3.6 N.D. -0.2 -3.4 -3.7
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 3 days -2.2 N.D. +0.0 -3.3 -3.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -2.3 N.D. -0.3 -1.1 -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -3.1 N.D. +0.5 -0.5 -0.7
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -3.0 N.D. -1.6 +0.7 +1.0
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.8 N.D. -1.5 +0.8 +0.8
carbon source D-Glucose (C) -0.4 N.D. -2.1 +1.3 +1.3
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -2.0 N.D. -0.2 +1.2 +1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.8 N.D. -0.3 +1.2 +1.3
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.2 N.D. -0.6 +1.4 +1.6
stress Cisplatin 0.003 mg/ml +0.3 N.D. -1.7 +1.5 +1.5
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM -1.0 N.D. -0.2 +1.7 +1.8
carbon source D-Mannose (C) -0.4 N.D. -0.5 +1.7 +2.0
carbon source D-Lactate (C) +1.0 N.D. -1.0 +1.5 +1.4
carbon source D,L-Lactate (C) +0.9 N.D. -0.4 +1.6 +1.7
carbon source D-Mannose (C) +0.4 N.D. -0.3 +1.8 +2.1
carbon source D-Ribose (C) +0.8 N.D. -0.4 +1.9 +1.8
carbon source L-Proline (C) +1.1 N.D. -0.4 +1.9 +1.9
micoeukaryotes C.elegans, mixed culture-2 +0.7 N.D. +0.2 +2.5 +2.6
control NoPredeControl +1.3 N.D. +0.6 +2.5 +2.6
control NoPredeControl +1.8 N.D. -0.2 +2.8 +3.0
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