Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS10040 and HSERO_RS10045 overlap by 4 nucleotidesHSERO_RS10045 and HSERO_RS10050 are separated by 41 nucleotidesHSERO_RS10050 and HSERO_RS10055 are separated by 285 nucleotidesHSERO_RS10055 and HSERO_RS10060 are separated by 239 nucleotides HSERO_RS10040: HSERO_RS10040 - O-acetyltransferase, at 2,272,287 to 2,272,853 _RS10040 HSERO_RS10045: HSERO_RS10045 - UDP-glucose 4-epimerase, at 2,272,850 to 2,273,881 _RS10045 HSERO_RS10050: HSERO_RS10050 - glycosyl transferase, at 2,273,923 to 2,275,002 _RS10050 HSERO_RS10055: HSERO_RS10055 - glycerate kinase, at 2,275,288 to 2,276,451 _RS10055 HSERO_RS10060: HSERO_RS10060 - hypothetical protein, at 2,276,691 to 2,276,930 _RS10060
Group Condition HSERO_RS10040 HSERO_RS10045 HSERO_RS10050 HSERO_RS10055 HSERO_RS10060
carbon source D-Galactose (C) N.D. -0.4 N.D. -1.2 N.D.
carbon source D-Glucose (C) N.D. -0.3 N.D. -1.0 N.D.
carbon source D-Ribose (C) N.D. +0.0 N.D. -1.3 N.D.
carbon source D-Galactose (C) N.D. -0.2 N.D. -1.0 N.D.
carbon source Xylitol (C) N.D. -1.1 N.D. -0.1 N.D.
carbon source D-Galactose (C) N.D. -0.4 N.D. -0.6 N.D.
stress A22 0.02 mg/ml N.D. -0.1 N.D. -0.9 N.D.
carbon source succinate (C) N.D. -0.8 N.D. -0.2 N.D.
carbon source Carbon source Deoxyribonucleic from herring sperm 5 mg/mL N.D. -0.3 N.D. -0.6 N.D.
carbon source Carbon source Phenylacetic 5 mM N.D. -0.4 N.D. -0.4 N.D.
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM N.D. -0.5 N.D. -0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -0.8 N.D. +0.0 N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. -0.3 N.D. -0.5 N.D.
stress nitrite 20 mM N.D. -0.5 N.D. -0.3 N.D.
carbon source D-Gluconic Acid (C) N.D. -0.5 N.D. -0.3 N.D.
micoeukaryotes C.elegans, mixed culture-2 N.D. -0.6 N.D. +0.2 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB N.D. -0.6 N.D. +0.3 N.D.
carbon source D,L-Lactate (C) N.D. -0.7 N.D. +0.4 N.D.
carbon source succinate (C) N.D. -0.7 N.D. +0.4 N.D.
carbon source D-Xylose (C) N.D. -0.6 N.D. +0.5 N.D.
supernatant control Vogels_fungal_media; pH 5.5 N.D. -0.4 N.D. +0.7 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.4 N.D. +0.7 N.D.
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM N.D. +0.8 N.D. -0.5 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -0.2 N.D. +0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. -0.5 N.D. +1.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.5 N.D. +0.4 N.D.
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI N.D. +0.1 N.D. +0.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.4 N.D. +0.4 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.2 N.D. +0.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.2 N.D. +1.4 N.D.
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