Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS09955	HSERO_RS09960	HSERO_RS09965	HSERO_RS09970	HSERO_RS09975
carbon source	D-Lactate (C)	-1.6	-0.4	-1.7	N.D.	-0.1
carbon source	D,L-Lactate (C)	-1.6	-0.6	-0.9	N.D.	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.5	-0.4	-1.0	N.D.	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.3	+0.1	-1.4	N.D.	+0.0
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.3	-0.0	-1.0	N.D.	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-1.2	+0.0	-1.1	N.D.	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-1.0	-0.1	-0.9	N.D.	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.3	-0.0	-1.1	N.D.	+0.1
carbon source	L-Rhamnose (C)	-1.6	-0.0	-0.2	N.D.	-0.3
carbon source	D-Glucose (C)	-1.0	-0.3	-0.6	N.D.	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.9	-0.4	-0.5	N.D.	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.0	-0.0	-0.5	N.D.	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.9	+0.1	-1.0	N.D.	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.8	-0.2	-0.5	N.D.	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-0.9	-0.1	-0.7	N.D.	-0.0
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.5	+0.0	-0.6	N.D.	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-1.2	-0.1	-0.2	N.D.	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	-1.2	+0.1	-0.6	N.D.	+0.1
carbon source	L-Lactate (C)	-0.4	-0.2	-0.9	N.D.	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-1.2	-0.3	-0.6	N.D.	+0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.8	+0.2	-0.9	N.D.	+0.4
vitamin	With vitamins t1	-0.8	-0.3	+0.4	N.D.	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.9	+0.2	-0.4	N.D.	+0.3
carbon source	Xylitol (C)	+0.2	-0.0	-1.0	N.D.	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.9	-0.1	+0.9	N.D.	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.2	-0.1	+1.2	N.D.	-0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-0.3	+0.1	+1.2	N.D.	-0.5
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.6	+0.4	+0.6	N.D.	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-0.4	+0.3	+1.0	N.D.	+0.1
carbon source	L-Malic (C)	+0.8	-0.0	+0.4	N.D.	+0.5