Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS09775	HSERO_RS09780	HSERO_RS09785	HSERO_RS09790	HSERO_RS09795
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-2.8	-3.6	-0.2	-0.0	-0.4
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 3 days	-4.2	-2.8	-0.0	+0.0	+0.1
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 8 days	-3.4	-3.4	+0.3	+0.0	+0.1
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 8 days	-3.6	-2.7	+0.1	-0.1	+0.1
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 8 days	-1.7	-4.4	+0.2	-0.0	-0.1
carbon source	D-Lactate (C)	-2.3	-1.4	-0.7	-0.3	-0.8
nitrogen fixation control	L-Malic (C) with ammonium chloride; anaerobic; 3 days	-2.7	-2.6	+0.0	-0.1	+0.1
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 8 days	-3.4	-2.3	+0.2	+0.0	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-0.8	-4.2	-0.1	+0.1	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	-4.0	-0.3	-0.1	-0.1	-0.5
stress	Chloride stress	-1.4	-0.4	-0.8	-0.9	-1.6
carbon source	L-Malic (C)	-3.4	+0.4	-0.5	-0.5	-1.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-2.3	-2.2	+0.2	-0.2	-0.3
carbon source	pyruvate (C)	-1.3	-0.9	-0.6	-0.6	-0.9
nitrogen fixation control	D-Glucose (C) with ammonium chloride; anaerobic; 3 days	-2.5	-2.3	+0.0	+0.2	+0.2
carbon source	pyruvate (C)	-1.1	-1.6	-0.7	-0.3	-0.6
carbon source	D-Lactate (C)	-0.9	-1.9	-0.7	-0.2	-0.3
control	NoPredeControl	+0.2	-4.1	-0.2	-0.1	+0.2
supernatant control	Vogels_fungal_media; pH 5.5	-3.1	-0.6	-0.1	+0.1	-0.2
carbon source	D,L-Malic Acid (C)	-2.1	-1.0	-0.3	-0.2	-0.4
stress	Chloride stress	-0.7	-0.1	-1.4	-0.8	-1.0
nitrogen source	L-Proline (N)	-4.4	+0.4	+0.2	-0.2	+0.1
carbon source	L-Malic (C)	-2.3	-0.8	-0.3	-0.1	-0.1
carbon source	D,L-Malic Acid (C)	-2.2	-0.6	-0.0	-0.5	-0.5
micoeukaryotes	Dictyostellum sp.mixed culture-1	-0.9	-2.9	-0.0	+0.0	+0.2
plant	Control soil assay; outgrowth in LB	-4.3	+0.1	+0.3	+0.0	+0.3
carbon source	Carbon source Phenylacetic 5 mM	-3.7	-0.0	+0.3	-0.1	-0.0
micoeukaryotes	C.elegans, mixed culture-1	-3.3	+0.2	+0.3	+0.3	-0.2
carbon source	D,L-Lactate (C)	-1.2	-1.8	-0.0	+0.3	+0.5
carbon source	L-Proline (C)	-2.2	+1.1	-0.5	-0.1	+0.1