Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 244 experiments or choose conditions or try the comparative fitness browser

500 ntHSERO_RS09680 and HSERO_RS09685 overlap by 4 nucleotidesHSERO_RS09685 and HSERO_RS09690 are separated by 20 nucleotidesHSERO_RS09690 and HSERO_RS09695 are separated by 122 nucleotidesHSERO_RS09695 and HSERO_RS09700 are separated by 70 nucleotides HSERO_RS09680: HSERO_RS09680 - 4'-phosphopantetheinyl transferase, at 2,196,889 to 2,197,281 _RS09680 HSERO_RS09685: HSERO_RS09685 - beta-hexosaminidase, at 2,197,278 to 2,198,306 _RS09685 HSERO_RS09690: HSERO_RS09690 - excinuclease ABC subunit C, at 2,198,327 to 2,200,192 _RS09690 HSERO_RS09695: HSERO_RS09695 - CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase, at 2,200,315 to 2,200,914 _RS09695 HSERO_RS09700: HSERO_RS09700 - tRNA-Gly, at 2,200,985 to 2,201,060 _RS09700
Group Condition HSERO_RS09680 HSERO_RS09685 HSERO_RS09690 HSERO_RS09695 HSERO_RS09700
stress Cisplatin 0.003 mg/ml N.D. N.D. -5.1 N.D. N.D.
stress sodium fluoride 100 mM N.D. N.D. -1.3 N.D. N.D.
stress Cobalt chloride 0.2 mM N.D. N.D. -1.2 N.D. N.D.
supernatant control Vogels_fungal_media; pH 5.5 N.D. N.D. -1.2 N.D. N.D.
stress Thallium(I) acetate 0.001 mg/ml N.D. N.D. -1.2 N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -1.0 N.D. N.D.
stress nitrate 200 mM N.D. N.D. -1.0 N.D. N.D.
supernatant control Vogels_fungal_media; pH 5.5 N.D. N.D. -0.9 N.D. N.D.
stress Nickel (II) chloride 0.6 mM N.D. N.D. -0.9 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -0.8 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -0.8 N.D. N.D.
carbon source D-Sorbitol (C) N.D. N.D. -0.8 N.D. N.D.
carbon source D-Glucose-6-Phosphate (C) N.D. N.D. -0.8 N.D. N.D.
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM N.D. N.D. -0.8 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. -0.8 N.D. N.D.
vitamin With vitamins t2 N.D. N.D. -0.8 N.D. N.D.
stress Fusidic 0.025 mg/ml N.D. N.D. -0.8 N.D. N.D.
carbon source Xylitol (C) N.D. N.D. -0.7 N.D. N.D.
carbon source Glycerol (C) N.D. N.D. -0.7 N.D. N.D.
stress A22 0.04 mg/ml N.D. N.D. -0.7 N.D. N.D.
carbon source D-Glucose-6-Phosphate (C) N.D. N.D. -0.7 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. -0.7 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -0.7 N.D. N.D.
carbon source L-Malic (C) N.D. N.D. -0.7 N.D. N.D.
stress Sisomicin 0.125 mg/ml N.D. N.D. -0.7 N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. -0.7 N.D. N.D.
carbon source D-Galacturonic Acid (C) N.D. N.D. -0.7 N.D. N.D.
plant Control soil assay; outgrowth in LB N.D. N.D. -0.7 N.D. N.D.
carbon source L-Glutamine (C) N.D. N.D. -0.7 N.D. N.D.
carbon source m-Inositol (C) N.D. N.D. -0.7 N.D. N.D.
remove
HSERO_RS09680
plot		 remove
HSERO_RS09685
plot		 remove
HSERO_RS09690		 remove
HSERO_RS09695
plot		 remove
HSERO_RS09700
plot