Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS09640 and HSERO_RS09645 are separated by 93 nucleotidesHSERO_RS09645 and HSERO_RS09650 are separated by 177 nucleotidesHSERO_RS09650 and HSERO_RS09655 are separated by 1 nucleotidesHSERO_RS09655 and HSERO_RS09660 are separated by 193 nucleotides HSERO_RS09640: HSERO_RS09640 - peptidase, at 2,188,163 to 2,189,641 _RS09640 HSERO_RS09645: HSERO_RS09645 - glutaredoxin, at 2,189,735 to 2,190,028 _RS09645 HSERO_RS09650: HSERO_RS09650 - elongation factor 4, at 2,190,206 to 2,191,999 _RS09650 HSERO_RS09655: HSERO_RS09655 - signal peptidase, at 2,192,001 to 2,192,915 _RS09655 HSERO_RS09660: HSERO_RS09660 - ribonuclease III, at 2,193,109 to 2,194,068 _RS09660
Group Condition HSERO_RS09640 HSERO_RS09645 HSERO_RS09650 HSERO_RS09655 HSERO_RS09660
stress Fusidic 0.025 mg/ml -0.9 N.D. -3.0 N.D. -1.8
stress Cisplatin 0.003 mg/ml -0.6 N.D. -3.3 N.D. -1.7
micoeukaryotes C.elegans, mixed culture-2 -1.5 N.D. -3.2 N.D. -0.7
carbon source Xylitol (C) -0.4 N.D. -2.4 N.D. -2.0
carbon source Xylitol (C) -0.3 N.D. -1.6 N.D. -2.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 N.D. -3.0 N.D. -1.3
carbon source D-Galactose (C) -0.6 N.D. -2.8 N.D. -1.1
carbon source D-Sorbitol (C) +0.3 N.D. -2.1 N.D. -2.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.1 N.D. -1.0 N.D. -1.7
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.3 N.D. -2.0 N.D. -1.4
carbon source D-Glucose-6-Phosphate (C) +0.0 N.D. -2.5 N.D. -1.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.6 N.D. -0.2 N.D. -2.0
carbon source D-Ribose (C) -0.2 N.D. -1.5 N.D. -1.9
stress nitrite 20 mM -1.0 N.D. -1.1 N.D. -1.5
vitamin With vitamins t2 -1.5 N.D. -1.0 N.D. -1.1
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.1 N.D. -1.0 N.D. -1.4
stress sodium fluoride 100 mM -0.7 N.D. -1.8 N.D. -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.9 N.D. -0.8 N.D. -1.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.6 N.D. -1.5 N.D. -1.3
stress nitrate 200 mM +0.3 N.D. -2.6 N.D. -1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.8 N.D. -0.7 N.D. -1.9
carbon source L-Arabinose (C) -0.3 N.D. -2.5 N.D. -0.5
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -0.1 N.D. -1.5 N.D. -1.7
carbon source L-mannose (C) +0.2 N.D. -1.6 N.D. -1.8
carbon source D-Ribose (C) -0.0 N.D. -1.3 N.D. -1.9
carbon source D-Mannose (C) +0.2 N.D. -1.7 N.D. -1.7
carbon source D-Mannose (C) +0.2 N.D. -1.3 N.D. -2.0
supernatant control Vogels_fungal_media; pH 5.5 +0.3 N.D. -1.2 N.D. -1.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.1 N.D. +1.0 N.D. -1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.5 N.D. +1.4 N.D. -1.9
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