Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS09625 and HSERO_RS09630 are separated by 79 nucleotidesHSERO_RS09630 and HSERO_RS09635 are separated by 1 nucleotidesHSERO_RS09635 and HSERO_RS09640 are separated by 14 nucleotidesHSERO_RS09640 and HSERO_RS09645 are separated by 93 nucleotides HSERO_RS09625: HSERO_RS09625 - RNA polymerase sigma factor RpoE, at 2,185,750 to 2,186,352 _RS09625 HSERO_RS09630: HSERO_RS09630 - sigma-E factor negative regulatory transcription regulator protein, at 2,186,432 to 2,187,130 _RS09630 HSERO_RS09635: HSERO_RS09635 - transcriptional regulator, at 2,187,132 to 2,188,148 _RS09635 HSERO_RS09640: HSERO_RS09640 - peptidase, at 2,188,163 to 2,189,641 _RS09640 HSERO_RS09645: HSERO_RS09645 - glutaredoxin, at 2,189,735 to 2,190,028 _RS09645
Group Condition HSERO_RS09625 HSERO_RS09630 HSERO_RS09635 HSERO_RS09640 HSERO_RS09645
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. -0.8 -1.6 N.D.
micoeukaryotes C.elegans, mixed culture-2 N.D. N.D. -0.4 -1.5 N.D.
stress nitrite 20 mM N.D. N.D. -0.7 -1.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. -0.5 -1.1 N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. N.D. -0.5 -1.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. -0.5 -1.1 N.D.
vitamin No vitamins t2 N.D. N.D. -0.1 -1.5 N.D.
carbon source D-Glucose (C) N.D. N.D. -0.4 -1.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. -0.6 -0.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -0.2 -1.1 N.D.
vitamin With vitamins t2 N.D. N.D. +0.2 -1.5 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. -0.1 -1.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -1.1 -0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. -0.4 -0.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. -0.3 -0.9 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -0.9 -0.3 N.D.
nutrient L-Serine N.D. N.D. -0.4 -0.8 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. N.D. -1.1 +0.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. -0.5 -0.5 N.D.
carbon source L-Asparagine (C) N.D. N.D. -0.5 -0.5 N.D.
nitrogen source L-Glutamic (N); high aeration N.D. N.D. +0.2 -0.9 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +0.2 -0.9 N.D.
control NoPredeControl N.D. N.D. -0.8 +0.2 N.D.
carbon source D-Galactose (C) N.D. N.D. +0.5 -0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. +0.6 -0.5 N.D.
carbon source Xylitol (C) N.D. N.D. +0.6 -0.4 N.D.
carbon source L-Fucose (C) N.D. N.D. +0.8 +0.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -0.3 +1.5 N.D.
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days N.D. N.D. +0.7 +0.7 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -0.3 +1.8 N.D.
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