Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS09620 and HSERO_RS09625 are separated by 91 nucleotidesHSERO_RS09625 and HSERO_RS09630 are separated by 79 nucleotidesHSERO_RS09630 and HSERO_RS09635 are separated by 1 nucleotidesHSERO_RS09635 and HSERO_RS09640 are separated by 14 nucleotides HSERO_RS09620: HSERO_RS09620 - flagellar hook-length control protein, at 2,185,158 to 2,185,658 _RS09620 HSERO_RS09625: HSERO_RS09625 - RNA polymerase sigma factor RpoE, at 2,185,750 to 2,186,352 _RS09625 HSERO_RS09630: HSERO_RS09630 - sigma-E factor negative regulatory transcription regulator protein, at 2,186,432 to 2,187,130 _RS09630 HSERO_RS09635: HSERO_RS09635 - transcriptional regulator, at 2,187,132 to 2,188,148 _RS09635 HSERO_RS09640: HSERO_RS09640 - peptidase, at 2,188,163 to 2,189,641 _RS09640
Group Condition HSERO_RS09620 HSERO_RS09625 HSERO_RS09630 HSERO_RS09635 HSERO_RS09640
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. -0.8 -1.6
micoeukaryotes C.elegans, mixed culture-2 N.D. N.D. N.D. -0.4 -1.5
stress nitrite 20 mM N.D. N.D. N.D. -0.7 -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. -0.5 -1.1
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. N.D. N.D. -0.5 -1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. -0.5 -1.1
vitamin No vitamins t2 N.D. N.D. N.D. -0.1 -1.5
carbon source D-Glucose (C) N.D. N.D. N.D. -0.4 -1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. N.D. -0.6 -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -0.2 -1.1
vitamin With vitamins t2 N.D. N.D. N.D. +0.2 -1.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. -0.1 -1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. N.D. -1.1 -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. -0.4 -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. -0.3 -0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. -0.9 -0.3
nutrient L-Serine N.D. N.D. N.D. -0.4 -0.8
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. N.D. N.D. -1.1 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. N.D. -0.5 -0.5
carbon source L-Asparagine (C) N.D. N.D. N.D. -0.5 -0.5
nitrogen source L-Glutamic (N); high aeration N.D. N.D. N.D. +0.2 -0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. +0.2 -0.9
control NoPredeControl N.D. N.D. N.D. -0.8 +0.2
carbon source D-Galactose (C) N.D. N.D. N.D. +0.5 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. N.D. +0.6 -0.5
carbon source Xylitol (C) N.D. N.D. N.D. +0.6 -0.4
carbon source L-Fucose (C) N.D. N.D. N.D. +0.8 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. -0.3 +1.5
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 8 days N.D. N.D. N.D. +0.7 +0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. N.D. -0.3 +1.8
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