Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS09400 and HSERO_RS09405 are separated by 13 nucleotidesHSERO_RS09405 and HSERO_RS09410 are separated by 297 nucleotidesHSERO_RS09410 and HSERO_RS09415 are separated by 801 nucleotidesHSERO_RS09415 and HSERO_RS09420 are separated by 118 nucleotides HSERO_RS09400: HSERO_RS09400 - molybdopterin-guanine dinucleotide biosynthesis protein A, at 2,135,338 to 2,135,964 _RS09400 HSERO_RS09405: HSERO_RS09405 - molybdenum cofactor biosynthesis protein MoeA, at 2,135,978 to 2,137,093 _RS09405 HSERO_RS09410: HSERO_RS09410 - ribonuclease E, at 2,137,391 to 2,140,579 _RS09410 HSERO_RS09415: HSERO_RS09415 - ribosomal large subunit pseudouridine synthase C, at 2,141,381 to 2,142,448 _RS09415 HSERO_RS09420: HSERO_RS09420 - HAD family hydrolase, at 2,142,567 to 2,143,226 _RS09420
Group Condition HSERO_RS09400 HSERO_RS09405 HSERO_RS09410 HSERO_RS09415 HSERO_RS09420
nitrogen source nitrate (N); high aeration -2.7 -1.7 N.D. -0.1 +0.0
nitrogen source nitrate (N); high aeration -1.9 -1.6 N.D. -0.1 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 -1.2 N.D. -0.9 -0.6
stress Nickel (II) chloride 0.6 mM -0.1 -0.4 N.D. -1.8 -0.4
carbon source L-Fucose (C) -1.1 -0.7 N.D. -1.2 +0.6
plant Control soil assay; outgrowth in LB -0.2 -1.5 N.D. -0.2 -0.6
carbon source D-Lactate (C) -0.5 -0.6 N.D. -1.7 +0.4
stress sodium fluoride 100 mM -0.9 +0.4 N.D. -1.3 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.6 -1.1 N.D. -0.6 +0.4
carbon source D-Glucose-6-Phosphate (C) -0.7 -1.2 N.D. -0.5 +0.3
carbon source D-Lactate (C) -1.0 -0.6 N.D. -1.1 +0.9
carbon source D-Glucose-6-Phosphate (C) -0.6 -1.0 N.D. -0.7 +0.6
carbon source L-Rhamnose (C) -0.5 -0.7 N.D. -1.0 +0.5
carbon source D-Galactose (C) -0.7 -1.1 N.D. -1.2 +1.2
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB -0.7 -0.9 N.D. -0.4 +0.5
stress Cobalt chloride 0.2 mM +0.7 +1.2 N.D. -2.8 -0.4
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.7 -1.1 N.D. +1.0 -0.4
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.7 -1.2 N.D. +0.7 +0.1
carbon source D-Glucose (C) -1.1 +0.1 N.D. -0.7 +0.8
carbon source Xylitol (C) -1.7 -0.4 N.D. -0.5 +1.8
carbon source D-Glucose (C) -0.8 -0.6 N.D. -0.5 +1.0
carbon source L-Rhamnose (C) -0.3 -0.5 N.D. -0.8 +1.0
carbon source D-Gluconic Acid (C) -0.1 -0.3 N.D. -1.2 +1.0
carbon source Xylitol (C) -1.2 -0.9 N.D. +0.3 +1.6
carbon source Glycerol (C) -0.3 -0.6 N.D. -0.6 +1.4
carbon source D-Ribose (C) -0.4 -0.5 N.D. -0.4 +1.2
carbon source D-Sorbitol (C) -0.4 -0.6 N.D. -0.1 +1.6
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +1.2 +0.7 N.D. +0.3 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.3 +0.6 N.D. -0.3 +1.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 +1.8 N.D. +0.2 +0.5
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