Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS09380 and HSERO_RS09385 are separated by 81 nucleotidesHSERO_RS09385 and HSERO_RS09390 are separated by 22 nucleotidesHSERO_RS09390 and HSERO_RS09395 are separated by 394 nucleotidesHSERO_RS09395 and HSERO_RS09400 overlap by 4 nucleotides HSERO_RS09380: HSERO_RS09380 - ABC transporter permease, at 2,129,190 to 2,131,688 _RS09380 HSERO_RS09385: HSERO_RS09385 - oxygen-binding protein, at 2,131,770 to 2,132,171 _RS09385 HSERO_RS09390: HSERO_RS09390 - recombinase RmuC, at 2,132,194 to 2,133,660 _RS09390 HSERO_RS09395: HSERO_RS09395 - molybdenum cofactor biosynthesis protein MoaA, at 2,134,055 to 2,135,341 _RS09395 HSERO_RS09400: HSERO_RS09400 - molybdopterin-guanine dinucleotide biosynthesis protein A, at 2,135,338 to 2,135,964 _RS09400
Group Condition HSERO_RS09380 HSERO_RS09385 HSERO_RS09390 HSERO_RS09395 HSERO_RS09400
nitrogen source nitrate (N); high aeration -0.1 N.D. +0.0 -2.1 -2.7
nitrogen source nitrate (N); high aeration -0.2 N.D. -0.1 -1.5 -1.9
carbon source Xylitol (C) -0.7 N.D. -0.5 -0.5 -1.7
stress Cisplatin 0.003 mg/ml -0.1 N.D. -1.7 -0.3 -0.4
carbon source Xylitol (C) -0.2 N.D. -0.3 -0.7 -1.2
carbon source D-Glucose (C) -0.3 N.D. -0.4 -0.7 -0.8
carbon source L-Proline (C) +0.3 N.D. -0.5 -0.8 -1.1
stress Fusidic 0.025 mg/ml -0.4 N.D. -1.4 -0.2 +0.0
carbon source D-Glucose-6-Phosphate (C) +0.1 N.D. -0.4 -1.1 -0.7
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.1 N.D. -1.1 -0.2 -0.5
carbon source D-Lactate (C) -0.4 N.D. -0.1 -0.3 -1.0
carbon source Glycerol (C) -0.2 N.D. -1.1 -0.2 -0.2
plant Control soil assay; outgrowth in LB -0.2 N.D. +0.1 -0.5 -1.1
carbon source D-Glucose-6-Phosphate (C) +0.1 N.D. -0.4 -0.6 -0.6
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.4 N.D. +0.5 -0.7 -0.8
carbon source D-Glucose (C) -0.2 N.D. +0.6 -0.6 -1.1
stress sodium fluoride 100 mM +0.3 N.D. -0.4 -0.2 -0.9
control NoPredeControl -0.3 N.D. +0.2 -0.7 -0.3
stress nitrate 200 mM -0.1 N.D. -1.2 +0.0 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.0 N.D. -0.6 +0.3 -0.6
carbon source L-Arabinose (C) +0.1 N.D. +0.3 -0.8 -0.5
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.5 N.D. +0.2 -0.7 -0.7
stress Lomefloxacin 0.012 mM +0.4 N.D. -1.3 +0.4 -0.1
supernatant control Vogels_fungal_media; pH 5.5 -0.2 N.D. -0.3 +0.5 -0.7
stress Cobalt chloride 0.2 mM +0.0 N.D. -1.6 +0.4 +0.7
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 N.D. +0.7 -0.4 -0.4
stress Nickel (II) chloride 0.6 mM +0.4 N.D. -0.5 +0.5 -0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.2 N.D. -0.7 +0.5 +0.7
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM +0.2 N.D. +0.2 +0.9 +0.9
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM -0.1 N.D. +0.4 +1.2 +1.2
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