Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS09365 and HSERO_RS09370 are separated by 84 nucleotidesHSERO_RS09370 and HSERO_RS09375 are separated by 165 nucleotidesHSERO_RS09375 and HSERO_RS09380 are separated by 85 nucleotidesHSERO_RS09380 and HSERO_RS09385 are separated by 81 nucleotides HSERO_RS09365: HSERO_RS09365 - phosphate starvation-inducible protein PsiF, at 2,127,806 to 2,128,105 _RS09365 HSERO_RS09370: HSERO_RS09370 - hypothetical protein, at 2,128,190 to 2,128,588 _RS09370 HSERO_RS09375: HSERO_RS09375 - hypothetical protein, at 2,128,754 to 2,129,104 _RS09375 HSERO_RS09380: HSERO_RS09380 - ABC transporter permease, at 2,129,190 to 2,131,688 _RS09380 HSERO_RS09385: HSERO_RS09385 - oxygen-binding protein, at 2,131,770 to 2,132,171 _RS09385
Group Condition HSERO_RS09365 HSERO_RS09370 HSERO_RS09375 HSERO_RS09380 HSERO_RS09385
carbon source D-Xylose (C) -0.2 +0.2 -2.1 +0.1 N.D.
carbon source Xylitol (C) +0.0 +0.4 -1.2 -0.7 N.D.
carbon source D-Glucose (C) +0.2 -0.8 -0.7 -0.2 N.D.
stress nitrate 200 mM +0.1 +0.4 -1.6 -0.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.3 +0.3 -1.6 -0.2 N.D.
plant Control soil assay; outgrowth in LB +0.4 -0.1 -1.2 -0.2 N.D.
carbon source D-Mannose (C) +0.4 -0.4 -0.8 -0.0 N.D.
stress Lomefloxacin 0.012 mM +0.0 -0.8 -0.6 +0.4 N.D.
carbon source D-Glucose-6-Phosphate (C) +0.1 +0.4 -1.4 +0.1 N.D.
carbon source L-Rhamnose (C) -0.2 +0.5 -1.0 -0.0 N.D.
carbon source a-Ketoglutaric (C) -0.1 +0.7 -0.7 -0.3 N.D.
carbon source Xylitol (C) +0.1 +0.6 -0.8 -0.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3 +0.9 -0.7 -0.2 N.D.
carbon source D-Lactate (C) +0.3 +0.6 -0.9 -0.2 N.D.
carbon source succinate (C) +0.2 +0.6 -0.7 -0.2 N.D.
stress Sisomicin 0.125 mg/ml +0.7 -1.0 -0.1 +0.3 N.D.
carbon source L-Proline (C) +0.3 +0.7 -1.0 -0.1 N.D.
carbon source D-Mannose (C) +0.1 +0.7 -0.9 +0.0 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.1 +0.6 -0.7 +0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.5 +0.4 -0.8 +0.0 N.D.
carbon source L-Fucose (C) -0.1 +0.9 -0.4 -0.3 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.0 +1.0 -0.2 -0.4 N.D.
carbon source Glycerol (C) +0.2 +0.7 -0.5 +0.2 N.D.
carbon source D-Ribose (C) +0.2 +0.6 +0.5 -0.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.3 +0.9 +0.6 +0.1 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +1.1 +0.0 -0.2 +0.5 N.D.
carbon source L-Arabinose (C) -0.1 +0.5 +0.9 +0.2 N.D.
vitamin No vitamins t1 +0.3 +0.5 +0.6 +0.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +0.3 +0.7 +0.3 N.D.
agar plate interaction control Taped volatile agar plate with no fungus -0.1 +0.7 +1.4 -0.1 N.D.
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