Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS09360	HSERO_RS09365	HSERO_RS09370	HSERO_RS09375	HSERO_RS09380
carbon source	L-Fucose (C)	-2.6	+0.0	-0.3	-0.0	-0.1
carbon source	L-Fucose (C)	-2.6	+0.1	+0.1	+0.2	-0.0
carbon source	D-Xylose (C)	-0.1	-0.2	+0.2	-2.1	+0.1
carbon source	Xylitol (C)	-0.6	+0.0	+0.4	-1.2	-0.7
carbon source	D-Glucose (C)	-0.3	+0.2	-0.8	-0.7	-0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB	-1.2	+0.2	-0.3	-0.3	-0.2
carbon source	D-Glucose-6-Phosphate (C)	-0.3	+0.1	+0.4	-1.4	+0.1
stress	nitrate 200 mM	+0.3	+0.1	+0.4	-1.6	-0.1
carbon source	a-Ketoglutaric (C)	-0.2	-0.1	+0.7	-0.7	-0.3
plant	Control soil assay; outgrowth in LB	+0.4	+0.4	-0.1	-1.2	-0.2
carbon source	succinate (C)	-0.4	+0.2	+0.6	-0.7	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.6	+0.3	+0.3	-1.6	-0.2
carbon source	D-Lactate (C)	-0.3	+0.3	+0.6	-0.9	-0.2
stress	Lomefloxacin 0.012 mM	+0.4	+0.0	-0.8	-0.6	+0.4
carbon source	L-Asparagine (C)	+0.8	+0.2	+0.0	-1.0	-0.3
carbon source	D-Mannose (C)	+0.6	+0.4	-0.4	-0.8	-0.0
carbon source	D-Lactate (C)	-0.6	-0.3	+0.6	+0.3	-0.4
carbon source	L-Proline (C)	-0.1	+0.3	+0.7	-1.0	-0.1
nitrogen source	L-Proline (N)	+1.0	-0.0	-0.1	-1.0	+0.1
stress	sodium fluoride 100 mM	+0.7	-0.4	-0.5	+0.0	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.4	-0.3	+0.9	-0.7	-0.2
carbon source	Glycerol (C)	-0.4	+0.2	+0.7	-0.5	+0.2
stress	Sisomicin 0.125 mg/ml	+0.5	+0.7	-1.0	-0.1	+0.3
carbon source	D-Galactose (C)	-1.1	+0.5	+0.8	+0.2	-0.0
agar plate interaction control	Taped volatile agar plate with no fungus	-0.3	-0.1	+0.7	+1.4	-0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.4	-0.3	+0.9	+0.6	+0.1
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	+0.6	+0.1	+0.4	+0.7	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.6	+1.1	+0.0	-0.2	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.6	-0.0	+1.0	-0.2	-0.4
vitamin	No vitamins t1	+0.5	+0.3	+0.5	+0.6	+0.2