Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS09330 and HSERO_RS09335 are separated by 1 nucleotidesHSERO_RS09335 and HSERO_RS09340 are separated by 160 nucleotidesHSERO_RS09340 and HSERO_RS09345 are separated by 79 nucleotidesHSERO_RS09345 and HSERO_RS09350 are separated by 320 nucleotides HSERO_RS09330: HSERO_RS09330 - cysteinyl-tRNA synthetase, at 2,121,108 to 2,122,499 _RS09330 HSERO_RS09335: HSERO_RS09335 - DNA-3-methyladenine glycosylase, at 2,122,501 to 2,123,160 _RS09335 HSERO_RS09340: HSERO_RS09340 - acetyl-CoA carboxylase subunit alpha, at 2,123,321 to 2,124,301 _RS09340 HSERO_RS09345: HSERO_RS09345 - tRNA(Ile)-lysidine synthetase, at 2,124,381 to 2,125,799 _RS09345 HSERO_RS09350: HSERO_RS09350 - hypothetical protein, at 2,126,120 to 2,126,407 _RS09350
Group Condition HSERO_RS09330 HSERO_RS09335 HSERO_RS09340 HSERO_RS09345 HSERO_RS09350
stress Sisomicin 0.125 mg/ml N.D. -3.3 N.D. N.D. N.D.
stress Lomefloxacin 0.012 mM N.D. -2.9 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -2.7 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -2.2 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -2.2 N.D. N.D. N.D.
micoeukaryotes Dictyostellum sp.mixed culture-1 N.D. -2.2 N.D. N.D. N.D.
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 3 days N.D. -2.0 N.D. N.D. N.D.
carbon source L-Glutamine (C) N.D. -1.7 N.D. N.D. N.D.
stress Cisplatin 0.003 mg/ml N.D. -1.6 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. -1.5 N.D. N.D. N.D.
nitrogen fixation control L-Malic (C) with ammonium chloride; anaerobic; 3 days N.D. -1.5 N.D. N.D. N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB N.D. -1.5 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. -1.5 N.D. N.D. N.D.
stress A22 0.04 mg/ml N.D. -1.4 N.D. N.D. N.D.
carbon source L-Asparagine (C) N.D. -1.4 N.D. N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X N.D. +1.4 N.D. N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. +1.4 N.D. N.D. N.D.
carbon source D-Sorbitol (C) N.D. +1.4 N.D. N.D. N.D.
carbon source Carbon source Phenylacetic 5 mM N.D. +1.4 N.D. N.D. N.D.
carbon source L-mannose (C) N.D. +1.4 N.D. N.D. N.D.
carbon source Carbon source Phenylacetic 5 mM N.D. +1.4 N.D. N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. +1.5 N.D. N.D. N.D.
carbon source m-Inositol (C) N.D. +1.5 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +1.6 N.D. N.D. N.D.
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI N.D. +1.6 N.D. N.D. N.D.
stress Cobalt chloride 0.2 mM N.D. +1.7 N.D. N.D. N.D.
stress Fusidic 0.025 mg/ml N.D. +1.8 N.D. N.D. N.D.
carbon source L-mannose (C) N.D. +2.0 N.D. N.D. N.D.
carbon source D-Mannose (C) N.D. +2.3 N.D. N.D. N.D.
carbon source D-Mannose (C) N.D. +2.5 N.D. N.D. N.D.
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