Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS09295 and HSERO_RS09300 are separated by 124 nucleotidesHSERO_RS09300 and HSERO_RS09305 are separated by 55 nucleotidesHSERO_RS09305 and HSERO_RS09310 are separated by 30 nucleotidesHSERO_RS09310 and HSERO_RS09315 are separated by 129 nucleotides HSERO_RS09295: HSERO_RS09295 - 23S rRNA (guanosine-2'-O-)-methyltransferase, at 2,114,326 to 2,115,063 _RS09295 HSERO_RS09300: HSERO_RS09300 - serine O-acetyltransferase, at 2,115,188 to 2,115,940 _RS09300 HSERO_RS09305: HSERO_RS09305 - UDP-2,3-diacylglucosamine hydrolase, at 2,115,996 to 2,116,787 _RS09305 HSERO_RS09310: HSERO_RS09310 - cyclophilin, at 2,116,818 to 2,117,306 _RS09310 HSERO_RS09315: HSERO_RS09315 - peptidyl-prolyl cis-trans isomerase, at 2,117,436 to 2,118,005 _RS09315
Group Condition HSERO_RS09295 HSERO_RS09300 HSERO_RS09305 HSERO_RS09310 HSERO_RS09315
stress Cobalt chloride 0.2 mM -1.4 -1.2 N.D. N.D. -0.3
stress sodium fluoride 100 mM -1.3 -1.0 N.D. N.D. +0.3
carbon source D-Xylose (C) +0.5 -1.5 N.D. N.D. -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.9 -0.5 N.D. N.D. -0.3
carbon source D-Glucose (C) -0.8 -0.3 N.D. N.D. -0.4
carbon source Xylitol (C) -0.3 -0.9 N.D. N.D. -0.3
stress Dimethyl Sulfoxide 5 vol% -1.1 -0.1 N.D. N.D. -0.2
carbon source L-Fucose (C) +0.2 -1.3 N.D. N.D. -0.4
carbon source L-Arabinose (C) -0.9 -0.5 N.D. N.D. +0.1
stress nitrate 200 mM -1.3 -0.2 N.D. N.D. +0.2
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.9 -0.2 N.D. N.D. -0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.0 -0.2 N.D. N.D. -0.1
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB -0.8 -0.1 N.D. N.D. -0.3
carbon source L-Lactate (C) -0.8 -0.4 N.D. N.D. +0.0
carbon source Xylitol (C) -0.5 -0.3 N.D. N.D. -0.4
vitamin With vitamins t2 -0.6 -0.4 N.D. N.D. -0.2
stress A22 0.02 mg/ml -0.2 -0.8 N.D. N.D. +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.5 +0.3 N.D. N.D. -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.8 -0.1 N.D. N.D. +0.3
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.8 +0.4 N.D. N.D. -0.2
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.9 -0.1 N.D. N.D. +0.4
supernatant control:fungal media R2A with Vogels_fungal_media 0.2X -0.6 +0.6 N.D. N.D. -0.4
stress Sisomicin 0.125 mg/ml -0.9 +0.2 N.D. N.D. +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.5 -0.3 N.D. N.D. +0.7
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.8 +0.2 N.D. N.D. +0.6
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.1 +0.7 N.D. N.D. -0.5
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -0.5 +0.5 N.D. N.D. +0.3
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 +0.9 N.D. N.D. -0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4 +0.4 N.D. N.D. +0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 +0.5 N.D. N.D. +0.7
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