Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS09255	HSERO_RS09260	HSERO_RS09265	HSERO_RS09270	HSERO_RS09275
plant	Control soil assay; outgrowth in LB	-3.9	-0.4	-0.9	+0.0	-0.3
nitrogen source	nitrate (N); high aeration	-3.0	-0.7	+0.2	-0.3	-0.2
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.7	-0.7	-1.3	-0.2	-0.1
carbon source	L-Rhamnose (C)	-2.0	-0.1	-0.5	-0.0	-0.2
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.3	-1.1	-1.6	+0.2	+0.1
nitrogen source	nitrate (N); high aeration	-2.2	-0.6	+0.1	-0.2	+0.2
carbon source	Xylitol (C)	-0.8	-0.9	-1.0	+0.1	+0.1
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-1.6	-0.7	-0.5	+0.2	+0.1
carbon source	D-Mannose (C)	-0.2	+0.4	-1.2	-0.7	-0.2
nitrogen source	L-Proline (N)	-1.1	-0.4	-0.7	+0.3	+0.1
carbon source	L-Malic (C)	-0.7	-0.6	-0.8	+0.2	+0.1
carbon source	D-Sorbitol (C)	-1.1	+0.3	-0.9	-0.0	-0.1
stress	nitrate 200 mM	-1.1	-0.6	-0.6	+0.5	+0.0
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	-0.5	-0.8	-1.0	+0.2	+0.4
carbon source	D-Lactate (C)	-0.8	-0.7	-0.4	+0.5	-0.3
carbon source	D,L-Lactate (C)	-1.1	-0.5	-0.4	+0.8	-0.3
stress	Lomefloxacin 0.012 mM	-1.5	+0.9	-0.3	+0.0	-0.6
carbon source	Xylitol (C)	+0.4	-0.5	-1.2	+0.2	-0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.7	-1.0	+0.3	-0.2	+0.4
carbon source	D-Galacturonic Acid (C)	-0.9	-0.2	-0.6	+0.5	+0.3
stress	A22 0.04 mg/ml	-0.9	-0.7	+0.1	+0.6	+0.1
control	NoPredeControl	-2.2	+0.1	+0.3	+1.0	+0.3
stress	Cobalt chloride 0.2 mM	-0.4	-1.9	+0.5	+0.6	+0.6
carbon source	D-Mannose (C)	+0.6	+0.0	-1.4	+0.5	-0.3
carbon source	D-Xylose (C)	-1.2	+0.8	+0.1	-0.3	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.0	+0.9	+0.2	-0.1	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+1.4	+0.5	-0.2	-0.5	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+1.9	+0.7	-0.1	-0.4	+0.2
micoeukaryotes	C.elegans, mixed culture-2	+0.9	+0.5	+0.6	+0.7	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+1.3	+0.2	+0.2	+1.0	+0.4