Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS09115 and HSERO_RS09120 are separated by 1 nucleotidesHSERO_RS09120 and HSERO_RS09125 are separated by 174 nucleotidesHSERO_RS09125 and HSERO_RS09130 are separated by 2 nucleotidesHSERO_RS09130 and HSERO_RS09135 overlap by 4 nucleotides HSERO_RS09115: HSERO_RS09115 - hypothetical protein, at 2,070,736 to 2,071,221 _RS09115 HSERO_RS09120: HSERO_RS09120 - hypothetical protein, at 2,071,223 to 2,071,504 _RS09120 HSERO_RS09125: HSERO_RS09125 - RND transporter, at 2,071,679 to 2,073,154 _RS09125 HSERO_RS09130: HSERO_RS09130 - hemolysin D, at 2,073,157 to 2,074,233 _RS09130 HSERO_RS09135: HSERO_RS09135 - ABC transporter, at 2,074,230 to 2,077,001 _RS09135
Group Condition HSERO_RS09115 HSERO_RS09120 HSERO_RS09125 HSERO_RS09130 HSERO_RS09135
stress Sisomicin 0.125 mg/ml -0.3 -2.2 -0.2 +0.6 -0.3
stress Lomefloxacin 0.012 mM -0.0 -2.1 -0.5 +0.6 -0.3
carbon source D-Glucose (C) +0.3 -0.8 -0.5 +0.2 +0.0
carbon source D-Xylose (C) -0.1 -1.0 +0.3 +0.3 -0.3
carbon source D-Gluconic Acid (C) -0.8 -0.3 +0.2 +0.3 -0.1
carbon source D-Galactose (C) -1.0 -0.3 +0.4 +0.6 -0.3
stress nitrate 200 mM +0.3 -1.1 +0.3 -0.2 +0.3
carbon source L-Lactate (C) -0.6 -0.3 +0.5 +0.3 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.2 -0.2 +0.2 -0.7 +0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.2 -0.7 -0.4 +0.2 +0.3
carbon source D-Glucose-6-Phosphate (C) -0.6 -0.1 +0.3 +0.4 -0.2
carbon source D-Lactate (C) -0.4 -0.0 +0.4 +0.5 -0.3
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.5 -0.7 +0.4 -0.2 +0.0
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI +0.4 -0.4 +0.5 -0.2 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 -0.5 +0.6 +0.3 +0.0
supernatant control Vogels_fungal_media; pH 5.5 +0.1 -0.2 +0.9 -0.2 +0.3
supernatant control Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB +0.3 -0.4 +0.9 -0.0 +0.1
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.6 -0.4 +0.5 +0.2 +0.1
agar plate interaction control Taped volatile agar plate with no fungus +0.1 -0.4 +0.2 +0.9 +0.3
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.3 +0.6 +0.6 +0.1 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.7 -0.3 +0.8 +0.0 +0.1
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB +0.4 +1.4 -0.4 -0.3 +0.1
control NoPredeControl +0.5 -0.4 +0.0 +0.8 +0.5
stress sodium fluoride 100 mM +0.7 -0.2 +0.3 +0.4 +0.1
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB +0.6 -0.1 +0.6 +0.4 +0.2
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.0 +1.2 +0.4 +0.1 +0.0
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.8X; growth supplemented with 0.4X LB +0.6 +0.0 +0.6 +0.4 +0.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 +0.6 +0.3 +0.7 +0.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.7 +0.5 -0.1 +0.9 +0.3
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X +0.7 +0.1 +0.9 +0.5 +0.1
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