Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS08960 and HSERO_RS08965 are separated by 279 nucleotidesHSERO_RS08965 and HSERO_RS08970 are separated by 81 nucleotidesHSERO_RS08970 and HSERO_RS08975 are separated by 143 nucleotidesHSERO_RS08975 and HSERO_RS08980 are separated by 68 nucleotides HSERO_RS08960: HSERO_RS08960 - 2-hydroxyacid dehydrogenase, at 2,026,216 to 2,026,770 _RS08960 HSERO_RS08965: HSERO_RS08965 - sugar dehydrogenase, at 2,027,050 to 2,027,799 _RS08965 HSERO_RS08970: HSERO_RS08970 - membrane protein, at 2,027,881 to 2,028,327 _RS08970 HSERO_RS08975: HSERO_RS08975 - membrane protein, at 2,028,471 to 2,028,923 _RS08975 HSERO_RS08980: HSERO_RS08980 - GNAT family acetyltransferase, at 2,028,992 to 2,029,582 _RS08980
Group Condition HSERO_RS08960 HSERO_RS08965 HSERO_RS08970 HSERO_RS08975 HSERO_RS08980
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -0.7 -0.7 -0.3 -0.6 N.D.
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.7 +0.1 -0.5 -1.1 N.D.
stress Lomefloxacin 0.012 mM +0.8 -0.3 +0.1 -2.7 N.D.
stress Cisplatin 0.003 mg/ml -0.9 -0.1 -0.5 -0.8 N.D.
carbon source D-Gluconic Acid (C) +0.0 -0.3 -0.7 -1.2 N.D.
carbon source pyruvate (C) -0.7 -0.4 -0.7 -0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 +0.0 +0.2 -1.5 N.D.
stress nitrate 200 mM +0.2 -0.3 -0.2 -1.3 N.D.
vitamin No vitamins t2 -0.2 +0.3 +0.1 -1.6 N.D.
carbon source D-Ribose (C) +0.5 -0.1 +0.3 -2.0 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X -0.1 -0.1 +0.5 -1.5 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X +0.5 -0.3 -0.3 -1.1 N.D.
stress Fusidic 0.025 mg/ml +0.4 -0.3 +0.2 -1.5 N.D.
carbon source L-mannose (C) +0.4 -0.5 +0.0 -1.1 N.D.
plant Control soil assay; outgrowth in LB +0.2 -0.9 +0.7 -0.9 N.D.
carbon source L-Arabinose (C) -0.4 -0.2 -1.0 +0.7 N.D.
carbon source L-Fucose (C) -0.9 -0.5 +0.1 +0.5 N.D.
carbon source D-Xylose (C) +0.7 -0.4 -0.2 -0.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.0 -0.3 -0.4 -0.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.9 +0.3 -0.3 +0.7 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.2 +0.3 +0.7 -1.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.1 +0.2 -0.1 +1.4 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 +0.4 +0.7 -0.8 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.9 -0.2 +0.5 -0.6 N.D.
agar plate interaction control Taped volatile agar plate with no fungus -0.5 -0.3 +0.3 +1.4 N.D.
control NoPredeControl -0.5 -0.1 +0.4 +1.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4 -0.3 -0.1 +1.9 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4 +1.2 +0.2 +0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.4 -0.3 +0.6 +0.0 N.D.
supernatant control Vogels_fungal_media; pH 5.5 +0.2 +0.1 +1.2 +0.5 N.D.
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