Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS08795 and HSERO_RS08800 are separated by 36 nucleotidesHSERO_RS08800 and HSERO_RS08805 are separated by 144 nucleotidesHSERO_RS08805 and HSERO_RS08810 are separated by 136 nucleotidesHSERO_RS08810 and HSERO_RS08815 are separated by 109 nucleotides HSERO_RS08795: HSERO_RS08795 - transcriptional regulator, at 1,994,910 to 1,995,422 _RS08795 HSERO_RS08800: HSERO_RS08800 - NAD(P)H quinone oxidoreductase, at 1,995,459 to 1,996,436 _RS08800 HSERO_RS08805: HSERO_RS08805 - triosephosphate isomerase, at 1,996,581 to 1,997,297 _RS08805 HSERO_RS08810: HSERO_RS08810 - preprotein translocase subunit SecG, at 1,997,434 to 1,997,772 _RS08810 HSERO_RS08815: HSERO_RS08815 - tRNA-Leu, at 1,997,882 to 1,997,966 _RS08815
Group Condition HSERO_RS08795 HSERO_RS08800 HSERO_RS08805 HSERO_RS08810 HSERO_RS08815
agar plate interaction control Taped volatile agar plate with no fungus -2.7 -0.2 N.D. N.D. N.D.
plant Control soil assay; outgrowth in LB -2.8 +0.0 N.D. N.D. N.D.
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM -2.3 +0.2 N.D. N.D. N.D.
plant Control soil assay; outgrowth in LB -1.5 -0.3 N.D. N.D. N.D.
nitrogen fixation D-Glucose (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic; 8 days -1.7 +0.0 N.D. N.D. N.D.
carbon source D-Glucose (C) -1.9 +0.3 N.D. N.D. N.D.
agar plate interaction control Taped volatile agar plate with no fungus -1.5 +0.0 N.D. N.D. N.D.
carbon source Xylitol (C) -1.8 +0.3 N.D. N.D. N.D.
carbon source L-Rhamnose (C) -1.2 -0.3 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.3 -0.1 N.D. N.D. N.D.
carbon source Carbon source 2-Deoxy-D-Ribose 5 mM -1.4 +0.0 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.1 -0.3 N.D. N.D. N.D.
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM -1.5 +0.2 N.D. N.D. N.D.
carbon source D-Xylose (C) -1.3 -0.0 N.D. N.D. N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -1.0 -0.3 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -1.2 +0.1 N.D. N.D. N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.2X; growth supplemented with 0.4X LB -1.2 +0.1 N.D. N.D. N.D.
carbon source Carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM -1.3 +0.2 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -1.2 +0.1 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -1.4 +0.4 N.D. N.D. N.D.
stress A22 0.04 mg/ml -0.9 +0.3 N.D. N.D. N.D.
plant Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB -1.2 +0.5 N.D. N.D. N.D.
carbon source D-Ribose (C) -0.9 +0.4 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.4 -0.2 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.5 -0.3 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +1.3 -0.1 N.D. N.D. N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +1.1 +0.2 N.D. N.D. N.D.
control NoPredeControl +1.3 -0.0 N.D. N.D. N.D.
carbon source L-Fucose (C) +1.9 +0.2 N.D. N.D. N.D.
carbon source L-Fucose (C) +2.3 +0.0 N.D. N.D. N.D.
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