Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS08760 and HSERO_RS08765 are separated by 87 nucleotidesHSERO_RS08765 and HSERO_RS08770 are separated by 71 nucleotidesHSERO_RS08770 and HSERO_RS08775 overlap by 4 nucleotidesHSERO_RS08775 and HSERO_RS08780 are separated by 269 nucleotides HSERO_RS08760: HSERO_RS08760 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 1,987,788 to 1,989,080 _RS08760 HSERO_RS08765: HSERO_RS08765 - hypothetical protein, at 1,989,168 to 1,990,172 _RS08765 HSERO_RS08770: HSERO_RS08770 - membrane protein, at 1,990,244 to 1,991,230 _RS08770 HSERO_RS08775: HSERO_RS08775 - membrane protein, at 1,991,227 to 1,991,952 _RS08775 HSERO_RS08780: HSERO_RS08780 - LamB/YcsF family protein, at 1,992,222 to 1,992,962 _RS08780
Group Condition HSERO_RS08760 HSERO_RS08765 HSERO_RS08770 HSERO_RS08775 HSERO_RS08780
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.2 -0.4 -1.5 -1.0 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 -0.4 -1.5 -1.1 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 -0.3 -1.3 -0.9 N.D.
micoeukaryotes Dictyostellum sp.mixed culture-2 +0.1 -0.1 -1.0 -1.1 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.2 -0.0 -0.8 -1.1 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.1 -0.6 -0.8 -0.8 N.D.
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.1 -0.4 -0.9 -0.6 N.D.
control NoPredeControl -0.5 -0.2 -0.1 -1.2 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 -0.3 -1.0 -0.7 N.D.
r2a control R2A control -0.3 -0.3 -0.7 -0.6 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant +0.3 -0.7 -0.9 -0.4 N.D.
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.0 +0.4 -0.8 -0.9 N.D.
stress Cisplatin 0.003 mg/ml -0.4 +0.8 +0.3 +0.3 N.D.
carbon source L-Proline (C) -0.4 +0.7 +0.6 +0.4 N.D.
nitrogen source nitrate (N); low aeration -0.4 +0.3 +0.7 +0.6 N.D.
carbon source Xylitol (C) -0.4 +0.4 +0.5 +0.9 N.D.
carbon source D-Sorbitol (C) -0.3 +0.4 +0.9 +0.7 N.D.
carbon source D-Glucose-6-Phosphate (C) +0.2 +0.1 +0.8 +0.8 N.D.
stress Nickel (II) chloride 0.6 mM +0.3 +0.8 +0.5 +0.4 N.D.
carbon source L-Asparagine (C) +0.3 +0.1 +0.6 +0.9 N.D.
stress Fusidic 0.025 mg/ml -0.1 +1.0 +0.9 +0.3 N.D.
carbon source D-Glucose-6-Phosphate (C) +0.1 +0.4 +0.9 +0.8 N.D.
carbon source m-Inositol (C) +0.2 +0.2 +1.0 +0.7 N.D.
carbon source D-Gluconic Acid (C) -0.1 +0.3 +1.3 +0.7 N.D.
carbon source L-Lactate (C) +0.3 +0.3 +0.9 +0.9 N.D.
carbon source L-Lactate (C) -0.2 +0.4 +1.3 +0.9 N.D.
stress Thallium(I) acetate 0.001 mg/ml -0.1 +0.9 +1.0 +0.6 N.D.
carbon source D-Glucose (C) +0.0 -0.0 +1.2 +1.3 N.D.
stress nitrate 200 mM +0.1 +1.2 +1.1 +1.0 N.D.
stress sodium fluoride 100 mM +0.0 +1.6 +1.5 +1.1 N.D.
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