Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS08755 and HSERO_RS08760 are separated by 343 nucleotidesHSERO_RS08760 and HSERO_RS08765 are separated by 87 nucleotidesHSERO_RS08765 and HSERO_RS08770 are separated by 71 nucleotidesHSERO_RS08770 and HSERO_RS08775 overlap by 4 nucleotides HSERO_RS08755: HSERO_RS08755 - polynucleotide phosphorylase/polyadenylase, at 1,985,306 to 1,987,444 _RS08755 HSERO_RS08760: HSERO_RS08760 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 1,987,788 to 1,989,080 _RS08760 HSERO_RS08765: HSERO_RS08765 - hypothetical protein, at 1,989,168 to 1,990,172 _RS08765 HSERO_RS08770: HSERO_RS08770 - membrane protein, at 1,990,244 to 1,991,230 _RS08770 HSERO_RS08775: HSERO_RS08775 - membrane protein, at 1,991,227 to 1,991,952 _RS08775
Group Condition HSERO_RS08755 HSERO_RS08760 HSERO_RS08765 HSERO_RS08770 HSERO_RS08775
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.2 -0.4 -1.5 -1.0
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.2 -0.4 -1.5 -1.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.3 -0.3 -1.3 -0.9
micoeukaryotes Dictyostellum sp.mixed culture-2 N.D. +0.1 -0.1 -1.0 -1.1
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. -0.2 -0.0 -0.8 -1.1
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. +0.1 -0.6 -0.8 -0.8
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI N.D. -0.1 -0.4 -0.9 -0.6
control NoPredeControl N.D. -0.5 -0.2 -0.1 -1.2
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. +0.1 -0.3 -1.0 -0.7
r2a control R2A control N.D. -0.3 -0.3 -0.7 -0.6
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. +0.3 -0.7 -0.9 -0.4
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. -0.0 +0.4 -0.8 -0.9
stress Cisplatin 0.003 mg/ml N.D. -0.4 +0.8 +0.3 +0.3
carbon source L-Proline (C) N.D. -0.4 +0.7 +0.6 +0.4
nitrogen source nitrate (N); low aeration N.D. -0.4 +0.3 +0.7 +0.6
carbon source Xylitol (C) N.D. -0.4 +0.4 +0.5 +0.9
carbon source D-Sorbitol (C) N.D. -0.3 +0.4 +0.9 +0.7
carbon source D-Glucose-6-Phosphate (C) N.D. +0.2 +0.1 +0.8 +0.8
stress Nickel (II) chloride 0.6 mM N.D. +0.3 +0.8 +0.5 +0.4
carbon source L-Asparagine (C) N.D. +0.3 +0.1 +0.6 +0.9
stress Fusidic 0.025 mg/ml N.D. -0.1 +1.0 +0.9 +0.3
carbon source D-Glucose-6-Phosphate (C) N.D. +0.1 +0.4 +0.9 +0.8
carbon source m-Inositol (C) N.D. +0.2 +0.2 +1.0 +0.7
carbon source D-Gluconic Acid (C) N.D. -0.1 +0.3 +1.3 +0.7
carbon source L-Lactate (C) N.D. +0.3 +0.3 +0.9 +0.9
carbon source L-Lactate (C) N.D. -0.2 +0.4 +1.3 +0.9
stress Thallium(I) acetate 0.001 mg/ml N.D. -0.1 +0.9 +1.0 +0.6
carbon source D-Glucose (C) N.D. +0.0 -0.0 +1.2 +1.3
stress nitrate 200 mM N.D. +0.1 +1.2 +1.1 +1.0
stress sodium fluoride 100 mM N.D. +0.0 +1.6 +1.5 +1.1
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