Fitness for 5 genes in Herbaspirillum seropedicae SmR1

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500 ntHSERO_RS08750 and HSERO_RS08755 are separated by 323 nucleotidesHSERO_RS08755 and HSERO_RS08760 are separated by 343 nucleotidesHSERO_RS08760 and HSERO_RS08765 are separated by 87 nucleotidesHSERO_RS08765 and HSERO_RS08770 are separated by 71 nucleotides HSERO_RS08750: HSERO_RS08750 - 30S ribosomal protein S15, at 1,984,713 to 1,984,982 _RS08750 HSERO_RS08755: HSERO_RS08755 - polynucleotide phosphorylase/polyadenylase, at 1,985,306 to 1,987,444 _RS08755 HSERO_RS08760: HSERO_RS08760 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 1,987,788 to 1,989,080 _RS08760 HSERO_RS08765: HSERO_RS08765 - hypothetical protein, at 1,989,168 to 1,990,172 _RS08765 HSERO_RS08770: HSERO_RS08770 - membrane protein, at 1,990,244 to 1,991,230 _RS08770
Group Condition HSERO_RS08750 HSERO_RS08755 HSERO_RS08760 HSERO_RS08765 HSERO_RS08770
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -0.2 -0.4 -1.5
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +0.2 -0.4 -1.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant N.D. N.D. -0.3 -0.4 -0.8
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. -0.1 -0.4 -0.9
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant N.D. N.D. +0.3 -0.7 -0.9
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +0.3 -0.3 -1.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +0.1 -0.6 -0.8
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI N.D. N.D. +0.1 -0.3 -1.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant N.D. N.D. +0.4 -0.5 -0.7
nitrogen source nitrate (N); low aeration N.D. N.D. -0.4 +0.3 +0.7
stress Cisplatin 0.003 mg/ml N.D. N.D. -0.4 +0.8 +0.3
carbon source L-Proline (C) N.D. N.D. -0.4 +0.7 +0.6
stress Cobalt chloride 0.2 mM N.D. N.D. -0.2 +0.6 +0.6
carbon source D-Sorbitol (C) N.D. N.D. -0.3 +0.4 +0.9
stress Lomefloxacin 0.012 mM N.D. N.D. +0.4 +0.5 +0.5
carbon source m-Inositol (C) N.D. N.D. +0.0 +0.8 +0.6
stress nitrite 20 mM N.D. N.D. +0.4 +0.3 +0.7
carbon source D-Lactate (C) N.D. N.D. +0.3 +0.3 +0.9
carbon source m-Inositol (C) N.D. N.D. +0.2 +0.2 +1.0
carbon source L-Lactate (C) N.D. N.D. -0.2 +0.4 +1.3
carbon source L-Lactate (C) N.D. N.D. +0.3 +0.3 +0.9
stress Nickel (II) chloride 0.6 mM N.D. N.D. +0.3 +0.8 +0.5
carbon source D-Gluconic Acid (C) N.D. N.D. -0.1 +0.3 +1.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. +1.5 +0.1 -0.0
carbon source D-Mannose (C) N.D. N.D. +0.4 +0.7 +0.5
carbon source L-Malic (C) N.D. N.D. +0.4 +0.7 +0.6
stress Fusidic 0.025 mg/ml N.D. N.D. -0.1 +1.0 +0.9
stress Thallium(I) acetate 0.001 mg/ml N.D. N.D. -0.1 +0.9 +1.0
stress nitrate 200 mM N.D. N.D. +0.1 +1.2 +1.1
stress sodium fluoride 100 mM N.D. N.D. +0.0 +1.6 +1.5
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