Fitness for 5 genes in Herbaspirillum seropedicae SmR1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	HSERO_RS08720	HSERO_RS08725	HSERO_RS08730	HSERO_RS08735	HSERO_RS08740
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.2	-2.5	-0.3	-0.1	+0.2
r2a control	R2A control	-0.1	-1.5	-0.1	-0.3	-0.2
micoeukaryotes	Acanthamoeba sp., muxed culture-2	+0.1	-2.2	+0.1	+0.2	-0.2
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.2	-1.9	+0.1	-0.2	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.3	-1.4	+0.0	-0.0	+0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X	+0.3	-1.5	-0.1	+0.2	-0.1
plant	Control soil assay; outgrowth in LB	+0.6	-0.5	-0.5	-0.3	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	-1.4	+0.2	+0.0	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	+0.1	-1.6	+0.2	+0.4	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	-1.1	-0.3	+0.3	+0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	-1.6	+0.1	+0.5	+0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	-1.1	+0.4	+0.5	-0.1
plant	Plant assay with Setaria viridis; 10 days of inoculation with plant; outgrowth in LB	+0.1	-1.1	+0.0	+0.9	+0.0
micoeukaryotes	Dictyostellum sp.mixed culture-2	+0.5	-1.0	+0.1	+0.4	-0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.8	-0.6	-0.1	+0.4	-0.4
carbon source	D-Glucose (C)	+0.7	+0.4	-0.2	+0.1	-0.9
carbon source	D-Glucose (C)	+0.6	+0.6	-0.1	+0.1	-0.8
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.4	-0.3	+0.4	+0.5	+0.5
carbon source	L-Glutamine (C)	-0.3	+1.3	-0.1	+0.1	-0.2
stress	Dimethyl Sulfoxide 5 vol%	-0.3	+1.4	-0.1	+0.3	-0.5
stress	Fusidic 0.025 mg/ml	-0.2	+0.9	+0.0	+0.7	-0.5
carbon source	D-Xylose (C)	-0.1	+1.3	+0.0	-0.4	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.4	-0.5	+0.2	+1.1	+0.0
stress	A22 0.02 mg/ml	-0.2	+1.5	-0.3	+0.5	-0.3
stress	Lomefloxacin 0.012 mM	+0.1	+1.6	-0.1	+0.0	-0.3
stress	Thallium(I) acetate 0.001 mg/ml	+0.2	+1.4	-0.2	+0.3	-0.3
stress	sodium fluoride 100 mM	-0.3	+0.8	+0.3	+0.5	+0.3
carbon source	D-Mannose (C)	-0.2	+1.1	+0.4	+0.3	+0.1
stress	Sisomicin 0.125 mg/ml	+0.4	+1.8	-0.2	+0.4	+0.1
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	+3.1	-0.1	-0.3	+1.5